Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., Type I secretion system, outer membrane component LapE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 80.5 bits (197), Expect = 9e-20
 Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 23/413 (5%)

Query: 8   ACVLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS 67
           A +L  L   + A   ++    Q+A++  P   I +  ++ +  D   A+    PSLS  
Sbjct: 13  ATLLGCLAFCAQAKDWALTDVLQEARRNHPSVKIRQSEMRAATLDLQTARWGRYPSLSTE 72

Query: 68  AGMNWSESQNGSSSYGATIEQTLWDS-RKWSALDKADADWVLAQLERNQAYNQLAHQLLS 126
                  +  G+    A ++Q LW   R  S +  A+A+   +Q   ++A   +  +   
Sbjct: 73  I-----VAAKGADQSVARVQQPLWTGGRLTSQIALAEANVTASQATLSEAQQAIVLEAGQ 127

Query: 127 AYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNA 186
           A+F      + L  AQ  +A+  +LL + E+R  A    S +  + R       S  L  
Sbjct: 128 AFFESLRFNARLQAAQANEAEHRRLLDVIERRVKAEVSPSTDATQARARLQQAISERLQF 187

Query: 187 QAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQK 246
           + +LET RS L  ++ A   Q+ ++        WP    LD    AA  HSP+      +
Sbjct: 188 ERQLETLRSNLQQIVGAQVEQL-KMPRSVVLGDWP----LDRLREAAWTHSPQRARLQAQ 242

Query: 247 VAISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEFNAGLTLSIPIDLNGATRSDNEKAHL 306
           +  SQ     ++S   P +      + G    GE    + L + +       S    + +
Sbjct: 243 IEASQAQIDTAKSALMPQVNLGYDLKLGRLSQGEDRGRVFLGVSLQTGAGLSS---LSAV 299

Query: 307 NWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQ-------QITMADQQVTHRDKVLRSKQQ 359
              +A+QQ  +  +  HQ  R+  Q V   W        Q+  A   +   D+V+ S  +
Sbjct: 300 ETAVARQQASRDALEQHQ--RELEQSVRTSWNELGSLMTQLEPARSLLGAADEVVESYLR 357

Query: 360 LFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIA 412
            F  G     D+++       A++ LA         ++ L+ L G L  + +A
Sbjct: 358 QFQVGRKSWLDVLNAQREKTNARYTLADIEAPLLLAKLRLMVLAGVLQPDHMA 410