Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., outer membrane channel protein TolC from Pantoea agglomerans CFBP13505 P0401

 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 88/427 (20%), Positives = 167/427 (39%), Gaps = 35/427 (8%)

Query: 17  SSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQ 76
           S ++ A  + Q +QQA+  +PD   A      + +    A+S LLP L   A   ++   
Sbjct: 17  SFASQAEDLLQVYQQARLSNPDLRSAAADRDSAFEKINEARSPLLPQLGLGADYTYNGGY 76

Query: 77  NGSS-------SYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYF 129
             SS       S    + QT++D  KW AL   +    +  +    A   L     +AYF
Sbjct: 77  RDSSGLHSNTTSGSLQLTQTIFDMSKWRALTLQEKAAGIQDVTYQVAQQDLILNTATAYF 136

Query: 130 ALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQ----LDEESTILN 185
            + +A   L+  + ++    + L    QR+  G +   +++  R        +E +   N
Sbjct: 137 NVLKAIDTLSYTEAQKQSIYRELDQTTQRFNVGLVAITDVQNARAQYDSVLANEVTARNN 196

Query: 186 AQAELETKRSQLSI-LINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAI 244
               +ET R    +  ++ ++  +D   T  P P       +   L  A+  +  LL A 
Sbjct: 197 LDNNVETLRQITGMDYMSLASLSIDRFRTDKPEP-------VSALLKQAESRNLSLLSAR 249

Query: 245 QKVAISQIAKQQSQSGYYPSL----------------RASAGYQDGDQRNGEFNAGLTLS 288
               +++   +Q ++G+ P++                RA+      D  +G    GL+ S
Sbjct: 250 LNQDLAREQIRQMEAGHMPTIGLTASTGMSNSKYGGSRANQSQGSTDSISGTNQVGLSFS 309

Query: 289 IPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVT 348
           +P+   G+  S  ++A  +++ A +          Q +R     V      I    Q V 
Sbjct: 310 LPLYSGGSVTSQVKQAQYSFVSASESLESAHRSAVQTVRSSFNNVNASISSINAYKQAVV 369

Query: 349 HRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLND 408
                L + +  +  G     D++D    L+ AK  L+   YSY   ++ +    G LN+
Sbjct: 370 SAQSSLDASEAGYQVGTRTIVDVLDATTVLYNAKQQLSDARYSYLINQLNISYALGTLNE 429

Query: 409 NAIAQLS 415
            ++ +L+
Sbjct: 430 QSLQKLN 436