Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., TolC family outer membrane protein from Serratia liquefaciens MT49

 Score = 92.8 bits (229), Expect = 2e-23
 Identities = 86/438 (19%), Positives = 190/438 (43%), Gaps = 39/438 (8%)

Query: 17  SSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS---AGMNWS 73
           S+   ++ I  A+  A ++ P    A    +  ++++ + ++ LLP +S +   +  NW 
Sbjct: 21  SAPVHSIGILDAYSLALEKDPTFRAAIKEKEAGDENENIGRAGLLPKVSANYQNSPRNWQ 80

Query: 74  -------------------ESQNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERN 114
                                Q  S S   T+ Q L+D   ++      A  +++     
Sbjct: 81  TQKYPASDIFGNSLGEATKRQQYRSHSSSITLTQPLFDYEAYARYKAGVAQTLMSDERYR 140

Query: 115 QAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRV 174
             Y  LA +++SAY  +A ++  + LA  ++A   + LA+ ++   AG+    ++ E + 
Sbjct: 141 SKYLDLAVRVISAYVEVAYSKDQIALASAQKAAYKEQLALNDRLMSAGEGTITDVSETQA 200

Query: 175 NQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTP-----TPSWPFSAELDDW 229
                E+  + A+  L+  + +L ++I     Q+DE+    P      P  P  ++ ++W
Sbjct: 201 RYSLAEAQEIEARDALDAAQRELEVIIGVPLDQLDELQVLRPGKFQVAPLIP--SKFEEW 258

Query: 230 LTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGYQDGD--------QRNGEF 281
              A +++P L  +   V  ++   +++++G+ P ++  A + + D        Q+    
Sbjct: 259 QKIALENNPMLAASRHGVDAAKYEVERNRAGFMPQVQLYASHSENDSSSDNTVNQKYRTD 318

Query: 282 NAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQN-LRQQIQQVEIEWQQI 340
           + G+ +S+PI   G   +   +A   +  A  +    ++G   N LR+Q         ++
Sbjct: 319 SIGVQVSVPIYAGGGVSASTRQAASRYGQAMYEM-DAQVGTTLNDLRKQFNLCISSRAKL 377

Query: 341 TMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELL 400
              +  V      + + +Q   AG     D+++    L+ A+ +LAS  Y+Y +  I LL
Sbjct: 378 AAYELAVKSATTQVTATRQSVLAGQRVNVDVLNAEQQLYSAQRDLASAKYTYIKSWITLL 437

Query: 401 KLTGQLNDNAIAQLSGAF 418
             +G L++  + +++  F
Sbjct: 438 SDSGTLDEKDVKRVAQYF 455