Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., Type I secretion outer membrane protein, TolC precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 85.1 bits (209), Expect = 4e-21
 Identities = 86/421 (20%), Positives = 167/421 (39%), Gaps = 24/421 (5%)

Query: 17  SSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSES- 75
           S+ + A ++ Q +QQA+  +P+   +      + +    A+S LLP L   A   +S   
Sbjct: 17  STLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGY 76

Query: 76  ------QNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYF 129
                  +  +S    + QTL+D  KW  L   +    +  +        L     +AYF
Sbjct: 77  RDANGINSNETSASLQLTQTLFDMSKWRGLTLQEKAAGIQDVTYQTDQQTLILNTANAYF 136

Query: 130 ALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAE 189
            +  A   L+  Q ++    + L    QR+  G +   +++  R       +  + A+  
Sbjct: 137 KVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNN 196

Query: 190 LETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQKVAI 249
           L+    +L  +     P++  ++ +      P +  ++  L  A++ +  LL A     +
Sbjct: 197 LDNAVEELRQVTGNYYPELASLNVEHFKTDKPKA--VNALLKEAENRNLSLLQARLSQDL 254

Query: 250 SQIAKQQSQSGYYPSLR--ASAGYQD-------------GDQRNGEFNAGLTLSIPIDLN 294
           ++   +Q+Q G+ P+L   AS G  D              D   G+   GL  S+P+   
Sbjct: 255 AREQIRQAQDGHLPTLNLTASTGISDTSYSGSKTNSTQYDDSNMGQNKIGLNFSLPLYQG 314

Query: 295 GATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVL 354
           G   S  ++A  N++ A +Q       + Q +R     +      I    Q V      L
Sbjct: 315 GMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSL 374

Query: 355 RSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIAQL 414
            + +  +  G     D++D   +L+ AK  LA+  Y+Y   ++ +    G LN+  +  L
Sbjct: 375 DAMEAGYSVGTRTIVDVLDATTTLYDAKQQLANARYTYLINQLNIKYALGTLNEQDLLAL 434

Query: 415 S 415
           +
Sbjct: 435 N 435