Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., type I secretion outer membrane protein, TolC family from Kangiella aquimarina DSM 16071

 Score =  106 bits (264), Expect = 2e-27
 Identities = 93/447 (20%), Positives = 186/447 (41%), Gaps = 49/447 (10%)

Query: 6   LTACVLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLS 65
           L    + SL   SS     + + +Q A +  P   I+E +++ +EQ   +++S LLP +S
Sbjct: 9   LVTLAVLSLSGFSSQANTDLLEVYQDALKNDPQYKISEANLRATEQGVRISRSSLLPQVS 68

Query: 66  GSAGMNWSE-----------------SQNGSSSYGATIEQTLWDSRKWSALDKADADWVL 108
            SA    S+                 ++  S++Y   + Q+L+D  +W AL++A+     
Sbjct: 69  ASATKGMSDYDYSGQGLDGSPSDPFSNEVDSTTYRVQLSQSLFDWSRWVALEQAELRVRA 128

Query: 109 AQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
           A+L    +   L  +   AYF     +  L   + ++    Q L +  +++ +G   + +
Sbjct: 129 AELSHAASLQDLMTRTAQAYFQTLSRKEVLEATRSEKEALQQQLDLTREQFESGLSSATD 188

Query: 169 -------LEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWP 221
                   ++ +V++L  E+   NA   L     Q    + A+    +EV    PTP   
Sbjct: 189 FLDAQANFDQAQVSELVAENEYTNAVEALREITGQYYSELEAAG---NEVTLTPPTP--- 242

Query: 222 FSAELDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEF 281
             A +DDW+ AA++ +  L      V +++   ++++SG+YP+   +  Y D +     F
Sbjct: 243 --ANIDDWMRAAREANLSLKAKQFDVRVAREEVKRNKSGHYPTADLNVTYSDQETETDRF 300

Query: 282 -----------------NAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQ 324
                             AG+T++IP+     T ++ E++  N+L    +  + +  + +
Sbjct: 301 FPIQNIDQNTLNMQDGYQAGITVTIPLFSGFRTSAETEQSKQNYLRTTHELDQSDRLVQK 360

Query: 325 NLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHN 384
           N R     ++   +      +        L S Q+ + AG     D++    S + A+ N
Sbjct: 361 NARMAYTNLQTSIKSFEANKRAYESSINSLESTQEGYQAGTRNIVDVLIATRSAYSAQRN 420

Query: 385 LASRWYSYWRQRIELLKLTGQLNDNAI 411
           +    Y Y    ++L    G L +  I
Sbjct: 421 MIRAKYDYLISSLQLKAAAGTLTEKDI 447