Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., outer membrane channel protein TolC from Erwinia tracheiphila SCR3

 Score = 90.5 bits (223), Expect = 1e-22
 Identities = 97/429 (22%), Positives = 171/429 (39%), Gaps = 39/429 (9%)

Query: 17  SSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQ 76
           S+++ A ++ Q +QQA+  +PD   +      + +    A+S LLP L   A   ++   
Sbjct: 17  SAASQAENLLQIYQQARLSNPDLRSSAADRDAAFEKINEARSPLLPQLGLGADYTYNNGY 76

Query: 77  NGS-------SSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYF 129
             S       +S    + QT++D  KW  L   +    +  +    A   L     +AYF
Sbjct: 77  RDSGGLHSNTTSGSLQLTQTIFDMSKWRTLTLQEKIASIQDVTYQTAQQTLILNTATAYF 136

Query: 130 ALAEAQSNLTLAQ-QKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLD-----EESTI 183
            +  A   L+  + QKQ+   QL   A QR+  G +   +++  R +Q D     E +  
Sbjct: 137 NVLNAIDTLSYTEAQKQSIYRQLDQTA-QRFNVGLVAITDVQNAR-SQYDSVLASEVTAR 194

Query: 184 LNAQAELETKRSQL-SILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLI 242
            N    LET R    +  +  ++  VD   T+ P P       ++  L  A+  +  LL 
Sbjct: 195 NNLDNNLETLRQVAGNYYLTLASLNVDSFKTEKPQP-------VNALLKEAESRNLSLLS 247

Query: 243 AIQKVAISQIAKQQSQSGYYPSL----------------RASAGYQDGDQRNGEFNAGLT 286
           A     +++   + +++G+ P+L                RA+      D   G    GL+
Sbjct: 248 ARLNQDLAREQIRSAETGHMPTLDLTASTGLSNSKYGGRRANQSSSSTDSIAGSNQVGLS 307

Query: 287 LSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQ 346
            S+P+   GA  S  ++A   ++ A +Q         Q +R     V      I    Q 
Sbjct: 308 FSLPLYAGGAVTSQVKQAQYAYVAASEQLESAHRAAVQTVRSSFNNVNASVSSINAYKQA 367

Query: 347 VTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQL 406
           V      L + +  +  G     D++D  ++L+ AK  LA   YSY    + +    G L
Sbjct: 368 VVSAQSSLDAMEAGYQVGTRTIVDVLDATSTLYNAKQQLADARYSYMINELNIKSALGTL 427

Query: 407 NDNAIAQLS 415
           N+  +  L+
Sbjct: 428 NEQDLLALN 436