Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., outer membrane channel protein TolC from Escherichia coli ECRC101

 Score = 94.0 bits (232), Expect = 9e-24
 Identities = 92/431 (21%), Positives = 170/431 (39%), Gaps = 37/431 (8%)

Query: 17  SSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSES- 75
           SS + A ++ Q +QQA+  +P+   +      + +    A+S LLP L   A   +S   
Sbjct: 17  SSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGY 76

Query: 76  ------QNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYF 129
                  + ++S    + Q+++D  KW AL   +    +  +        L     +AYF
Sbjct: 77  RDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYF 136

Query: 130 ALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAE 189
            +  A   L+  Q ++    + L    QR+  G +   +++  R       +  + A+  
Sbjct: 137 NVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNN 196

Query: 190 LETKRSQLSILINASAPQ-----VDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAI 244
           L+    QL  +     P+     V+   T  P P       ++  L  A+  +  LL A 
Sbjct: 197 LDNAVEQLRQITGNYYPELAALNVENFKTDKPQP-------VNALLKEAEKRNLSLLQAR 249

Query: 245 QKVAISQIAKQQSQSGYYPSL------------------RASAGYQDGDQRNGEFNAGLT 286
               +++   +Q+Q G+ P+L                  R +AG Q  D   G+   GL+
Sbjct: 250 LSQDLAREQIRQAQDGHLPTLDLTASSGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLS 309

Query: 287 LSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQ 346
            S+PI   G   S  ++A  N++ A +Q       + Q +R     +      I    Q 
Sbjct: 310 FSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQA 369

Query: 347 VTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQL 406
           V      L + +  +  G     D++D   +L+ AK  LA+  Y+Y   ++ +    G L
Sbjct: 370 VVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTL 429

Query: 407 NDNAIAQLSGA 417
           N+  +  L+ A
Sbjct: 430 NEQDLLALNNA 440