Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., outer membrane channel protein TolC from Dickeya dianthicola ME23

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 84/421 (19%), Positives = 170/421 (40%), Gaps = 24/421 (5%)

Query: 17  SSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSES- 75
           S+++ A  + Q +QQAK  +PD   A  +   + +    A+S LLP L   A   ++   
Sbjct: 17  SAASQAEDLLQVYQQAKTTNPDLRSAAANRDAAFEKINEARSSLLPQLGLGADYTYNNGY 76

Query: 76  ------QNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYF 129
                  N  +S    + Q++++   W AL   +    +  +    +   L     +AYF
Sbjct: 77  RDRKDVNNNVTSASLQLTQSIFNMSLWRALTLQEKQAGIQDVSYQTSQQTLLLNTSTAYF 136

Query: 130 ALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAE 189
            +  A   L+    ++    + L    QR+  G +   +++  R       ++ + A+  
Sbjct: 137 NVLRAIDALSYVSAQKQSIYRELDQTTQRFNVGLVAITDVQNARSQYDSVLASEVTARNN 196

Query: 190 LETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQKVAI 249
           L+     L  +     PQ+  ++    +P  P +  ++  L  A++ +  LL A     +
Sbjct: 197 LDNAMEILRQVTGNFYPQLAGLNIDRFSPQKPDA--VNGLLKEAENRNLSLLSARLSQDL 254

Query: 250 SQIAKQQSQSGYYPSLR--ASAGYQD-------------GDQRNGEFNAGLTLSIPIDLN 294
           ++   + ++SG+ P+L   AS G  +              D   G+   GL+ S+PI   
Sbjct: 255 AREQIRSAESGHLPTLNLTASTGVTNTNYSGSRVADSNLSDTYVGQNQIGLSFSLPIYSG 314

Query: 295 GATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVL 354
           G T S  ++A  +++ + +        + Q LR     +      +    Q V      L
Sbjct: 315 GGTSSRVKQAQHSFVASSESMESAHRSVIQTLRSAHNNISASISSVNAYKQAVISAQSSL 374

Query: 355 RSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIAQL 414
            + +  +  G     D++D   +L+ AK  L+   Y Y   ++ L +  G LN++ +  L
Sbjct: 375 DAMEAGYQVGTRTIVDVLDATTTLYNAKQQLSGARYDYLINQLNLKQALGTLNEDDLRTL 434

Query: 415 S 415
           +
Sbjct: 435 N 435