Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., Macrolide-specific efflux protein MacA from Variovorax sp. SCN45

 Score = 94.4 bits (233), Expect = 5e-24
 Identities = 92/344 (26%), Positives = 158/344 (45%), Gaps = 30/344 (8%)

Query: 35  TLNVSRGTIEKQAVAVGQIMPSHSVAIKSQINGIVGEIYVREGQHVEQGQPLIKVRPNPT 94
           T +V R  +E   +A G +     V + +Q++G +  + V  GQ V++G  L ++ P  +
Sbjct: 40  TASVQRTDLENAVLATGVLQALKQVEVGAQVSGQLKSLKVVLGQTVKKGDWLAEIDPVIS 99

Query: 95  PQALTDASTEL--MQSEANLESDLQRLANLERLVKQQIIP---ANYDDYVRAKADVKAKQ 149
              L     +L  +Q++   +    R A L    +Q+++    A   D   A A+++A +
Sbjct: 100 QNTLAQEQAKLDNLQAQKLAKEVRIRQAQLSWTRQQEMLAQDAAAKQDMESADAELRALR 159

Query: 150 AEVQQKRQNLELIRSGEASIGQAKLSST-LYAPISGTILNIKVEVGEPIISTESSQAATE 208
           A+       +   R   AS  Q  LS T + API G +++I    G+ +++  S Q  T 
Sbjct: 160 ADGVSLDAQIRQQRLALAS-AQTNLSYTRIVAPIDGDVVSISTLEGQTVVA--SFQVPT- 215

Query: 209 MIQLADMKNIVFKGSVSEHDAAQLNAGMPASITVAPYPEQVINGQLTKVAIQSERLNNPE 268
           +++LAD+  +  K  VSE D  ++ AG P   T+   P++   G L  V    E++NN  
Sbjct: 216 LMKLADLSTMTVKAQVSEADVVRVKAGQPVYFTILGDPDKRYYGTLRAVQPSPEKINN-- 273

Query: 269 NKDGKSFDNGFQVEIGQLDIPE-NMTLRSGFSASAKITLQRAADVITLPERALQFEG--- 324
                 F N         D+P  + TLR   +A   I L  A   + +P  AL       
Sbjct: 274 ----AVFFNAL------FDVPNPDRTLRVDMTAQVAIMLGEAKQALVVPLTALGTRDKDG 323

Query: 325 -ETPMVLIADGSAQGYTAHPVKLGLSDGVQVEILEGVAEKDSIV 367
            +   VL AD S +      V++G+S+  Q ++LEG+ E D ++
Sbjct: 324 RQEVRVLKADQSVE---KRMVRVGISNNFQAQVLEGLKEGDKVI 364