Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score = 74.3 bits (181), Expect = 6e-18
 Identities = 91/373 (24%), Positives = 163/373 (43%), Gaps = 40/373 (10%)

Query: 8   LATLVGVGLAGGYYTLTYTPES---SSPLPTLNVSRG---TIEKQAVAVGQIMPSHSVAI 61
           +A +  + L G  + L   P +   ++PL  + VS     ++ +    VG+  PS +V I
Sbjct: 31  IAAVALIALFGIGWKLVDRPSAQAAAAPLAAVGVSAPLARSVTQWDDYVGRFAPSQTVEI 90

Query: 62  KSQINGIVGEIYVREGQHVEQGQPLIKVRPNPTPQALTDASTELMQSEANLESDLQRLAN 121
           + +++G V  I+ R+G  V QGQ L  +   P   AL +A   +  + + L         
Sbjct: 91  RPRVSGAVTAIHFRDGDFVRQGQLLFTIDQRPFQAALAEARASVASARSALLLAQNDYGR 150

Query: 122 LERLVKQQIIPANYDDYVRAKADVKAKQAEVQQKRQNLELIRSGEASIGQAKLSSTLYAP 181
           ++RL   + + A+  D +R++  ++A QA +    Q  E  R+ +    Q +      AP
Sbjct: 151 VQRLTGDEAVSASEVDSLRSR--LQAAQAAL-AGAQARERSRALDVEFTQVR------AP 201

Query: 182 ISGTILNIKVEVGEPIISTESSQAATEMIQLADMKNIVFKGSVSEHDAAQLNAGMPASIT 241
           ISG + + +V++G  +   E S A+  +  +  +  I F    SE  A  L +       
Sbjct: 202 ISGRVSDRRVDIGNLVSGGEGSTASL-LTTVNKLDPIYFNFDASE--ALYLKSQRDKE-- 256

Query: 242 VAPYPEQVINGQLTKVAIQSERLNNPENKDGKSFDNGFQVEIGQL------DIPENMTLR 295
                    NG   +V +Q E   N + +   + DNG     G +      D P N  L 
Sbjct: 257 ---------NGGAVEVRLQDEADYNHKGRLDFT-DNGLDPRSGTIRIRAVFDNPGNF-LT 305

Query: 296 SGFSASAKITLQRAADVITLPERALQFEGETPMVLIADGSAQGYTAHPVKLG-LSDGVQV 354
            G   + ++     A+ + +P+ A+Q +     VL+ D         PV+LG + DG+++
Sbjct: 306 PGLFGNMRLANGGKANALLVPDEAIQSDQARKTVLVVD-KDDSVAVKPVELGPIVDGLRI 364

Query: 355 EILEGVAEKDSIV 367
            I  G+  KD +V
Sbjct: 365 -IRSGLDPKDRVV 376