Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score = 84.3 bits (207), Expect = 5e-21
 Identities = 93/381 (24%), Positives = 166/381 (43%), Gaps = 44/381 (11%)

Query: 3   KRWTLLATLVGVGLAGGYYTLTYTPESSSPLPT---LNVSRGTIEKQAVAVGQIMPSHSV 59
           KR+ +   +V  GL      +T     ++P+PT   L V  G +++  +A G++     V
Sbjct: 9   KRYVIALVIVIAGL------ITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKV 62

Query: 60  AIKSQINGIVGEIYVREGQHVEQGQPLIKVRPNPTPQALTDASTELM-------QSEANL 112
            + +Q++G +  + V  G  V++ Q L  + P      + +    LM       Q+EA L
Sbjct: 63  DVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAEL 122

Query: 113 ESDLQRLANLERLVKQQIIPANYDDYVRAKADVKAKQAEVQQKRQNLELIRSGEASIGQA 172
           +      +  +RL + + +  +  D   A  ++  KQA++         I+  +AS+  A
Sbjct: 123 KLARVTYSRQQRLAQTKAV--SQQDLDTAATEMAVKQAQIGTIDAQ---IKRNQASLDTA 177

Query: 173 KLS---STLYAPISGTILNIKVEVGEPIISTESSQAATEMIQLADMKNIVFKGSVSEHDA 229
           K +   + + AP++G +  I    G+ +I+   +Q A  ++ LADM  ++ K  VSE D 
Sbjct: 178 KTNLDYTRIVAPMAGEVTQITTLQGQTVIA---AQQAPNILTLADMSAMLVKAQVSEADV 234

Query: 230 AQLNAGMPASITVAPYPEQVINGQLTKVAIQSERLNNPENKDGKSFDNGFQVEIGQLDIP 289
             L  G  A  TV   P     GQ+  V    E++N     D   +   F+V        
Sbjct: 235 IHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVN-----DAIFYYARFEVP------N 283

Query: 290 ENMTLRSGFSASAKITLQRAADVITLPERAL---QFEGETPMVLIADGSAQGYTAHPVKL 346
            N  LR   +A   I L    +V+T+P  AL     +    + L+ +G  +      V +
Sbjct: 284 PNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR---EREVTI 340

Query: 347 GLSDGVQVEILEGVAEKDSIV 367
           G  +   VEI++G+   D +V
Sbjct: 341 GARNDTDVEIVKGLEAGDEVV 361