Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 84/330 (25%), Positives = 141/330 (42%), Gaps = 46/330 (13%)

Query: 51  GQIMPSHSVAIKSQINGIVGEIYVREGQHVEQGQPLIKVRPNPTPQALTDASTELMQSEA 110
           G ++P + + I+ Q++G + +I+V +GQ V +GQ L ++  +    A   A   L  ++A
Sbjct: 55  GTVVPLNEIEIRPQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKA 114

Query: 111 NLESDLQRLANLERLVKQQIIPANYDDYVRAKADVKAKQAEVQQKRQNLELIRSGEASIG 170
           NLE   + LA  E L KQ+ I     DY  AKAD+   +++V           S EA + 
Sbjct: 115 NLERVKKDLARYEALDKQEAIAKQQLDY--AKADILTAESQVS----------SAEAQVR 162

Query: 171 QAKLS---STLYAPISGTI------LNIKVEVGEPIISTESSQAATEMIQLADMKNIVFK 221
                   S + AP SGT+      L  +V  G+ +++T SS        L D   +V +
Sbjct: 163 STLTDYNYSVITAPFSGTVGISQVRLGAQVSAGQSLLNTLSSNDPV----LVDF--VVNE 216

Query: 222 GSVSEHDAAQLNAGMPASITVAPYPEQVI---NGQLTKVAIQSERLNNPENKDGKSFDNG 278
             V        N  +P S     + E  +   +G+LT +     R +   N         
Sbjct: 217 RDVRRFSKMMKNESLPDSTFTIQFGENDVYRHHGELTTIDRAVGRQSGTIN--------- 267

Query: 279 FQVEIGQLDIPENMTLRSGFSASAKITLQRAADVITLPERALQFE-GETPMVLIADGSAQ 337
            +VE    D      L  G + + ++  Q   D I +P +A+  + GE  + ++ D S  
Sbjct: 268 MRVEFPNPD----RELIPGMTLNLRVLNQDIGDQIAIPFKAVTEQMGEYFVYVVGDDSV- 322

Query: 338 GYTAHPVKLGLSDGVQVEILEGVAEKDSIV 367
                 V+LG   G ++ + EG+     IV
Sbjct: 323 -VHQQNVQLGTKVGAEIVVREGLKPGQKIV 351