Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  111 bits (278), Expect = 3e-29
 Identities = 100/383 (26%), Positives = 175/383 (45%), Gaps = 56/383 (14%)

Query: 29  SSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAIKSQINGIVGEIYVREGQHVEQGQPLIK 88
           + + + T   S+ TI ++  A G I P   V +   + G + E+ + EG  V+Q   L+K
Sbjct: 37  AETEVETTKASKKTIVEKVSASGVIEPETEVKLSPDVAGEIIELNISEGDSVKQNDLLVK 96

Query: 89  VRPNPTPQALTDASTELMQSEANLESDLQRLANLERLVKQQ---------------IIPA 133
           +RP+    AL      L Q +ANL      L   E L  +                I  +
Sbjct: 97  IRPDNFISALDRTRANLNQQKANLAQSQAALKRSEALFDRAKLQYERNKSLYESNVISDS 156

Query: 134 NYD----DYVRAKADVKAKQAEVQQKRQNLELIRSGEASIGQAKLS---STLYAPISGTI 186
            ++    DYV A+ D+KA Q  V+       +++S +AS+ +A  +   + ++AP  G +
Sbjct: 157 EFEQATADYVSAENDLKAAQQSVEAAEY---VVKSSQASVEEANENLRLTNVFAPTDGIV 213

Query: 187 LNIKVEVGEPIISTESSQAATEMIQLADMKNIVFKGSVSEHDAAQLNAGMPASITVAPYP 246
             + VE GE ++ T+   A TEM+++AD+  +     V+E+D  +++ G    I V  Y 
Sbjct: 214 SKLLVEKGERVVGTQ-QMAGTEMLRIADLSVMEVVVDVNENDIVRISLGDTTIIEVDAYS 272

Query: 247 E--QVINGQLTKVAIQSERLNNPENKDGKSFDNGFQVEI-------GQLDIPEN-MTLRS 296
              +   G +T +A      N+   K  +     F+VEI        +L   EN    R 
Sbjct: 273 HTGEKFTGVVTSIA------NSANEKATQDAVTEFEVEIRILNESYEKLITKENRYPFRP 326

Query: 297 GFSASAKITLQRAADVITLPERALQFEGE------------TPMVLIADGSAQGYTAHPV 344
           G +AS +I  ++ ADV+++P  A+    +              ++ +++G+    T   V
Sbjct: 327 GMTASVEIITEKKADVLSVPLAAVTTRDDIRVDSTNAESDLQEIIFMSEGNKAHLTR--V 384

Query: 345 KLGLSDGVQVEILEGVAEKDSIV 367
           K G+SD   +EILEG+ E + +V
Sbjct: 385 KTGISDFENIEILEGIKEGEELV 407