Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., Macrolide-specific efflux protein MacA precursor from Alteromonas macleodii MIT1002

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 88/371 (23%), Positives = 170/371 (45%), Gaps = 32/371 (8%)

Query: 7   LLATLVGVGLAGGYYTLTYTPESSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAIKSQIN 66
           L+A +V V  A   Y   Y+P++++     +     IE   V+ GQ+ P   V + +Q++
Sbjct: 30  LIAIIVFVP-AYAVYAWLYSPQTNTEYLFQDAKIRDIELNLVSTGQLEPKRYVEVGAQVS 88

Query: 67  GIVGEIYVREGQHVEQGQPLIKV-------RPNPTPQALTDASTELMQSEANLESDLQRL 119
           G V  I+V EG  V++G  L+++       +   +  AL     +L Q  A  E    R 
Sbjct: 89  GQVDNIHVEEGDIVKEGDLLVEIDARVFETQVQNSQAALDSKKAQLAQLRAERELAEVRA 148

Query: 120 ANLERLVKQQIIPANYDDYVRAKADVKAKQAEVQQKRQNLELIRSGEASI--GQAKLS-S 176
              + L KQ  +  + D  V +  ++K    ++     ++  I++ EAS+     KL  +
Sbjct: 149 QRNQNLFKQNAV--SQDVVVSSDTNLKVIDTKI---TASIAQIKADEASLEGDITKLGFA 203

Query: 177 TLYAPISGTILNIKVEVGEPIISTESSQAATEMIQLADMKNIVFKGSVSEHDAAQLNAGM 236
            ++APISGT+  + V  G+ +    ++Q A  ++Q++D+  +  +  VSE D  ++  GM
Sbjct: 204 KIFAPISGTVATLPVREGQTL---NANQNAPVLLQISDLSVMTLRAEVSEADVQKIKRGM 260

Query: 237 PASITVAPYPEQVINGQLTKVAIQSERLNNPENKDGKSFDNGFQVEIGQLDIPENMTLRS 296
           P   +     +   +  + +V      LN+            +QV I  ++ PE  TL  
Sbjct: 261 PVYFSTLGDNKTFYHSTVRQVLPTPTVLNDVVL---------YQVLI-DVENPER-TLMD 309

Query: 297 GFSASAKITLQRAADVITLPERALQFEGETPMVLIADGSAQGYTAHPVKLGLSDGVQVEI 356
             +       ++    +++P  A++       V++  G     T  PVK+G+ +   ++I
Sbjct: 310 AMTTQVFFVQEQEKGALSVPLAAVKGRARNQFVMLKQGDEVVRT--PVKVGIKNRTHIQI 367

Query: 357 LEGVAEKDSIV 367
           +EG++E D +V
Sbjct: 368 IEGLSEGDEVV 378