Pairwise Alignments

Query, 344 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., DNA-binding transcriptional repressor (NCBI) from Escherichia coli BW25113

 Score =  200 bits (508), Expect = 5e-56
 Identities = 120/329 (36%), Positives = 192/329 (58%), Gaps = 1/329 (0%)

Query: 10  MATINDVCKLAGVSKATVSRVLNETGQVKAQTREAVLAAMQQLGYQPNSLAQALATNTTN 69
           M TI DV + AGVS ATVSRVLN +  V A TREAV+ A+ +L Y+PN+ AQALAT  ++
Sbjct: 1   MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNANAQALATQVSD 60

Query: 70  SIGLVLPHFESSYFGSILFEAEQGAQKAGKKLLVMNSKNSEQGEKEAVATLAAQRCDAIL 129
           +IG+V+     ++FG+++   +  AQ+  K +L+ NS +  + E+ A+  L  QRC+A++
Sbjct: 61  TIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALI 120

Query: 130 LYSRHLNEVQLLELQQQHPSPLVILNRRLHHPQLHSFGLDQTQIAQLAMQHLLNLGHRQI 189
           ++S+ L++ +L +     P  +V++NR +         LD    A++A + LLN GH++I
Sbjct: 121 VHSKALSDDELAQFMDNIPG-MVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNGHQRI 179

Query: 190 ACITSPLVSETGKIRYQVYQQALHEQGIELSSSLVIEGDNTLLGGYQAMQQLLQQGISMT 249
             ++S    E   +R   +  AL EQ I    S +  G   + GG  AM +LL + + +T
Sbjct: 180 GYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGAGTPDMPGGEAAMVELLGRNLQLT 239

Query: 250 AVFACNDDMALGAMRAMHEHGIHVPKQVSIIGIDNEPAAAFAIPSLSSVSLPIGELTQQA 309
           AVFA ND+MA GA+ A+ ++GI +P  +SIIG D+ P A +  P L++V  PI  + + A
Sbjct: 240 AVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLA 299

Query: 310 ISLAVEIANKKPQDAQHRLYQGSLIARES 338
             LA++ A           +  +L+ R S
Sbjct: 300 TELALQGAAGNIDPRASHCFMPTLVRRHS 328