Pairwise Alignments

Query, 434 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., sn-glycerol-3-phosphate-binding periplasmic protein UgpB from Xanthobacter sp. DMC5

 Score =  275 bits (702), Expect = 3e-78
 Identities = 151/424 (35%), Positives = 237/424 (55%), Gaps = 13/424 (3%)

Query: 20  ASTLAATEITWWHAMGGQLGETVNQLATDFNASQSDYKLTPVYKGSYTETLTAGIAAFRA 79
           A   A  +IT+WHAM G LGE + +L   FNA+Q    + PV+KG+Y ET+TA IAAFRA
Sbjct: 28  APASAPVQITFWHAMAGPLGEELKRLCDAFNAAQKAVVVEPVFKGTYPETMTAAIAAFRA 87

Query: 80  GQAPNILQVFDAGAATIMSSKGVAKPVQDLMIESGYPFTAQDYIAGVRNFYADNTGKMVG 139
           G+AP+++Q+++ G  +++++    K V  L  E+G       Y+  VR++Y+   G+M  
Sbjct: 88  GKAPHLVQMYEVGTGSMLAAGAAVKQVWQLAEETGVRLDPAIYMPAVRSYYSLPDGRMAS 147

Query: 140 MPFNSSTPVLYYNKDMLASVN---AQAPQTYEQLEQVAAKLAEKG--QAGFAQSLTPWIM 194
           MPFNSSTP+++ NKD+         + P+T+EQ+   A  L  KG  + G   +   W+ 
Sbjct: 148 MPFNSSTPIMWCNKDLFERAGLDPERPPETWEQVVTAAEALRSKGGVKVGVTTAWPTWVH 207

Query: 195 FENFKSRHNLPLSDKQNGYQDLSTKIMFNSDDMLMHVKKLKEWSDKGYYKYYGSDWDANQ 254
            E F + H++P + K NG++ L  +++FNS  M  H+ +L E +  G + Y G    A  
Sbjct: 208 LECFGAIHDVPFATKANGFEGLDAELVFNSPAMRGHITRLLEMAKAGTFTYAGRG-AAGD 266

Query: 255 TPFERGEVAMWMGSSGSFGGLRNRVKFNLGTTYLPYWESVTKNPTHTFIGGAALFALQG- 313
           + F  GE  +   SSG    +    +F      LPY  +V   P ++ IGGA+L+ +   
Sbjct: 267 SLFPAGETGISFNSSGVRAAVVRDARFRPMAAQLPYDPAVRATPNNSIIGGASLWTMTAP 326

Query: 314 -HTPAQDKGVAAFFAYLTKPETQMNWHKTTGYVPVTNAAYDLTKQSGYYQENPDAEVGVK 372
             T A+ K VA+F A+L +P+T  +WH+ TGYVPVT A   L+   GYY  NP A++ ++
Sbjct: 327 DRTAAEYKAVASFLAFLARPDTDASWHQRTGYVPVTLAGAGLSLAQGYYARNPGADIPIR 386

Query: 373 QLSLPDGEWT---KGYRLGYYPQVREVMHREFDNIFSGRSTVESSLNKVEDESAKLLNRF 429
           QL+   GE T   KG RLG   ++R ++  EF+    G+    ++L+       K+L  F
Sbjct: 387 QLN--RGEVTINSKGLRLGRLTEIRAIIEEEFETALQGKQDAGTALDTAVARGNKVLREF 444

Query: 430 ARTV 433
            ++V
Sbjct: 445 EKSV 448