Pairwise Alignments

Query, 434 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., sugar binding protein from Agrobacterium fabrum C58

 Score = 53.9 bits (128), Expect = 9e-12
 Identities = 90/385 (23%), Positives = 150/385 (38%), Gaps = 51/385 (13%)

Query: 2   NKVWLTGLLTATASGVFSASTLAATEITWWHAMGGQLGET--VNQLATDFNASQSDYK-- 57
           NK    G  TA  S  FS + LA T++T W+   G + E   +  +  DFN+SQSD++  
Sbjct: 3   NKAIFAGAFTAL-SMFFSTAALAQTDLTMWYHGAGNVEERKILAGIIEDFNSSQSDWRVS 61

Query: 58  LTPVYKGSYTETLTAGIAAFRAGQAPNILQVFDAGAATIMSSKGVAKPVQDLMIESGYPF 117
           L    + +Y E++TA   A  + + P+IL V D       +  G  +P+Q   I+     
Sbjct: 62  LQEFPQSAYNESVTA---AALSNKLPDILDV-DGPNMPNWAWSGYLQPLQ---IDEA--- 111

Query: 118 TAQDYIAGVRNFYADNTGKMVGMPFNSSTPVLYYNKDMLAS-----VNAQAPQTYEQLEQ 172
             ++++ G    + D   K+  +    +   ++  K +L          + P T E+   
Sbjct: 112 NLENFLPGAVGKWGD---KLYSVGLWDAAVAVFARKSVLDENGIRIPTLEQPWTGEEFNA 168

Query: 173 VAAKLAEKGQAGFAQSL-----TPWIM--FENFKSRHNLPLSDKQNGYQDLSTKIMFNSD 225
              K+A  G+  +A  L     T W    F  F       L DK++ YQ  + +   N D
Sbjct: 169 ALEKIAAGGKFEYAIDLGMADKTEWYSYAFSPFLESFGGSLIDKKD-YQ--TAENFLNGD 225

Query: 226 DMLMHVKKLKEWSDKGYYKYYGSDWDANQTPFERG-----EVAMWMGSSGSFGGLRNRVK 280
             +    K  EW    + K        +    E G         WMG+  +   L    K
Sbjct: 226 SAV----KFGEWWQSLFEKKLAPGTSQSPADHETGFLEGRHALQWMGNWVAVKALE---K 278

Query: 281 FNLGTTYLPYWESVTKNPTHTFIGGAALFALQGHTPAQDKGVAAFFAYLTKPETQMNWHK 340
           +     +LP      + P    IG  +       T    +G +AF  +  + +    +  
Sbjct: 279 YGDDLLFLPS-PDFGQGPK---IGAGSWQFGVSATSKHPQGASAFIEFAIQDKYLAQFSD 334

Query: 341 TTGYVPVTNAAYDLTKQSGYYQENP 365
             G +P T++A  +TK   Y Q  P
Sbjct: 335 AVGLIPATSSAAQMTK--NYRQGGP 357