Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., Na+-driven multidrug efflux pump from Variovorax sp. SCN45

 Score =  210 bits (535), Expect = 7e-59
 Identities = 146/446 (32%), Positives = 220/446 (49%), Gaps = 11/446 (2%)

Query: 7   EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLM 66
           E   + + A  VL+  +A    G  DTI+AG  S   +AA+S+ A+I++   +  +G+L 
Sbjct: 7   ERGLIARHAGTVLVGQLAVMAFGVTDTIIAGRYSEGALAALSVGAAIFVSVYVSLMGVLQ 66

Query: 67  ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKT 126
           AL+PV A+L+GAGR +++   V Q L LA +  V  +A L     ++R   V   M    
Sbjct: 67  ALLPVWAELHGAGRSNEVGRSVRQSLYLAAIAIVVGMAALLAPAAVLRLTQVPPEMRGDV 126

Query: 127 VGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV--IGFIGLLLNIPLNWIFVYGKFGA 184
             Y+  + FA+   LLF+     T   SL KP +V  +    L + +PL+  F +G  G 
Sbjct: 127 EMYLRVLAFALAPALLFRLFS--TLNQSLGKPQLVTWLQLGSLFVKLPLSIWFTFGGAGL 184

Query: 185 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 244
           P +G VGCG AT  V W ML   ++ + +S      +++E   KP   ++    +LG P 
Sbjct: 185 PAMGLVGCGWATLCVNWAMLACAIWLLRSSPFYRGYRLWERLEKPDWHQIRLFAKLGVPG 244

Query: 245 AAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE 304
             A+  EVT F ++AL +A LG+   AAHQ+A N  ++ +M P+S+  A S RV   LG 
Sbjct: 245 GLAVLVEVTSFTLMALFIARLGTAAAAAHQIAANLMAVAYMVPLSLSIATSARVSFWLGA 304

Query: 305 QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQ 364
            D   A  A  +G    +  A + +   V FR  +A +Y++N  VVALA  L+L  A Y 
Sbjct: 305 GDAMRARHACRLGFEQTVLCALLFSTALVTFRHPLANVYSDNPAVVALAASLMLAVAAYH 364

Query: 365 CMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYIL---GMTNWLT-EQPLGAKG 420
             DA+Q +    LR Y+   A         W LGL   Y+L   G+  W     PL    
Sbjct: 365 LADAMQTLCVFLLRCYRVTLAPLVIYCTMLWGLGLGGSYLLAYHGLGPWTAMRSPL---A 421

Query: 421 FWLGFIIGLSAAALMLGQRLYWLQKQ 446
           FW+     L+  A+     L W  K+
Sbjct: 422 FWMMSAGALALTAMFFISLLRWTMKK 447