Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., MATE efflux family protein from Pseudomonas putida KT2440

 Score = 71.6 bits (174), Expect = 5e-17
 Identities = 111/464 (23%), Positives = 194/464 (41%), Gaps = 49/464 (10%)

Query: 3   RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVS-AIDMAAVSIAASIWLPSILFG 61
           R++     +  LA P+++++++   +  VD+ + G +  A  + AV++ A+++     F 
Sbjct: 9   RHRPTHRKVWALAAPMILSNISVPLVALVDSTVIGHLPHAHQLGAVAVGATLFT----FM 64

Query: 62  VGLL----MALVPVVAQLNGAGRQHKIPFEVHQGLILAL--LVSVPIIAVLFQTQFIIRF 115
           VGL+    M      AQ  G G    +   + QGL+LA+   + + ++A+ F +Q  +  
Sbjct: 65  VGLMGFLRMGSTGFAAQAAGRGDGAALRQVLVQGLLLAVGFALLIGLLALPF-SQLALHA 123

Query: 116 MDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNW 175
           M    A+   T  + H  +  +PA L   AL  +  G    +  + I     LLNI LN 
Sbjct: 124 MQPSAALQQSTEDFFHTRLLGLPAALASYALVGWFLGTQNARAPLAILLTTNLLNIALNL 183

Query: 176 IFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRL-------AHVKVFETFHK 228
            FV G     + G +G   A+ I  W   LL L     + R        A +K ++ +  
Sbjct: 184 WFVLGL----DWGVLGSARASVIAEWSAALLGLALTRPALRAYPGQIVWAALKRWQAW-- 237

Query: 229 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPM 288
              + L+ + R  F  + AL     +F ++ +  A LG   VAA+ + LN   L      
Sbjct: 238 ---RPLLAVNRDIFLRSLAL---QLVFLLITVQGARLGEATVAANALLLNGLLLTAYALD 291

Query: 289 SIGAAVSIRVGHKLGEQD----TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYT 344
            +  AV    GH +G +D     +   +A    L+T L  A +  L   LF +    L T
Sbjct: 292 GLAHAVEALCGHAIGARDRDTLRRSLVVACGWSLITSLGFAGLFLLGGHLFID----LQT 347

Query: 345 ENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYI 404
           + + V A A   L + A+   +     +  G   G      + +   +S  ++ LP    
Sbjct: 348 DIESVRAAAYPYLPYLALLPLIAVWSYLLDGLFIGATRAREMRNAMLVSV-LIALPVAVA 406

Query: 405 LGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSD 448
           +          LG  G W+ F+  +   A+ LG  + W  +Q D
Sbjct: 407 M--------SGLGNHGLWMAFLGFMGLRAVTLGW-VGWRLQQRD 441