Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  497 bits (1279), Expect = e-145
 Identities = 250/458 (54%), Positives = 339/458 (74%), Gaps = 2/458 (0%)

Query: 1   MHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILF 60
           + +Y  EA  L+ LA PV++A VAQT MGFVDT+MAGG SA DMAAV+I  SIWLP+ILF
Sbjct: 1   VQKYTSEARQLLALAIPVILAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILF 60

Query: 61  GVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFM-DVE 119
           G GLL+AL PV+AQLNG+GR+ +I  +V QG  LA  VSV ++ VL+   +IIR M +++
Sbjct: 61  GHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLVMIVLWNAGYIIRSMHNID 120

Query: 120 EAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVY 179
            A+A K VGY+ A+++  P YL FQ  R+  +G++ TKP MV+GF+GLL+NIP+N+IF+Y
Sbjct: 121 PALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFLGLLVNIPVNYIFIY 180

Query: 180 GKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 239
           G FG PELGG+GCGVATA VYW+M + +L YI  ++ +  ++  + F KP    + RL +
Sbjct: 181 GHFGMPELGGIGCGVATAAVYWVMFIAMLSYIKHARSMRDIRNEKGFGKPDSVVMKRLIQ 240

Query: 240 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVG 299
           LG P+A ALFFEVTLFAVVALLV+PLG   VA HQ+ALNFSSL+F+ PMS+ AAV+IRVG
Sbjct: 241 LGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVG 300

Query: 300 HKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLF 359
           ++LG+  T  A  AA  GL  G+  A +TA+ TV  R+ IALLY +N  VVALA QL+L 
Sbjct: 301 YRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTVTLRKHIALLYNDNPEVVALAAQLMLL 360

Query: 360 AAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAK 419
           AA+YQ  D++QV+ +G LRGYKD  +IF  TF +YWVLGLP+GYIL +T+ + ++ +G  
Sbjct: 361 AAVYQISDSIQVIGSGILRGYKDTRSIFFITFTAYWVLGLPSGYILALTDLVVDR-MGPA 419

Query: 420 GFWLGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLAAK 457
           GFW+GFIIGL++AA+++  R+ +LQ+Q   + L  AA+
Sbjct: 420 GFWMGFIIGLTSAAVLMMLRMRYLQRQPSAIILQRAAR 457