Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., EmmdR/YeeO family multidrug/toxin efflux MATE transporter from Erwinia tracheiphila SCR3

 Score = 85.5 bits (210), Expect = 3e-21
 Identities = 93/443 (20%), Positives = 175/443 (39%), Gaps = 20/443 (4%)

Query: 14  LATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVA 73
           LA P+   ++    MG + T +   +    MA V +A S  +  I F   + +    VVA
Sbjct: 37  LAVPIFFENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVVISFFAAIDLGTTVVVA 96

Query: 74  QLNGAGRQHKIPFEVHQGLILALLVSVPIIA--VLFQTQFIIRFMDVEEAMATK-TVGYM 130
              G   + +      Q L+L  + ++ +     LF  Q I    +  E    +  + Y+
Sbjct: 97  FSLGKLNRERAEAATRQSLVLMTVFAILLATGIELFGEQIIDLIAENAEPQVKELALVYL 156

Query: 131 HAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGV 190
               ++ PA  +         G   TK  M+I     +LNI  + + +YG FG   +G  
Sbjct: 157 GITAWSYPAAAIALIGCGALRGAGNTKIPMLINGGMNILNIVFSTVLIYGCFGWKGMGFA 216

Query: 191 GCGVATAIVYWIMLLLLLFYIVTS-KRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALF 249
           G G+   +  ++  + +++ +V        + +   F +     L  +  +G P +    
Sbjct: 217 GAGLGLTLSRYVGAVAVIYVLVIGFNPQLKITLRSYFSRLDTGILKEVLGIGVPAS---- 272

Query: 250 FEVTLF----AVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQ 305
            E  LF     +  + VA +G+ V+A + +A + +S++ +   ++G+  +I VG +LG+ 
Sbjct: 273 IESVLFNGGKLLTQVFVAGMGTDVIAGNFIAFSIASMINLPGNALGSTATIIVGTRLGKG 332

Query: 306 DTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQC 365
                               C  A L+      +A  YT+   V+ +   L+   A +  
Sbjct: 333 QLGQPERQLKTIFWLSNLCLCFLAALSAPLAGVLASFYTQEDDVIHVVKILIWLNAAFMP 392

Query: 366 MDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGF 425
           + A   V    L+G +D       + +  W   +  GY LG+         G  G WLG 
Sbjct: 393 IWAASWVLPAGLKGARDARFTMWVSMLGMWGCRIIAGYTLGVM-----LGFGVVGVWLGM 447

Query: 426 IIGLSAAALMLGQRL---YWLQK 445
           ++     A+   +R+    WL K
Sbjct: 448 VLDWIVRAIFFYRRMTSGRWLWK 470



 Score = 48.1 bits (113), Expect = 6e-10
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 223 FETFHKPQPKELIRLFRLGFPVAAALFFE---VTLFAVVA-LLVAPLGSTVVAAHQVALN 278
           F ++++ +    +  +R   P+A  +FFE   V L  V++  LV+ LG   +A   +A +
Sbjct: 16  FSSWYQKRRSSRVLFWREITPLAVPIFFENLCVLLMGVLSTFLVSWLGKEAMAGVGLADS 75

Query: 279 FSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQ 338
           F+ +V  F  +I    ++ V   LG+ + + A  A    L+     A + A    LF EQ
Sbjct: 76  FNMVVISFFAAIDLGTTVVVAFSLGKLNRERAEAATRQSLVLMTVFAILLATGIELFGEQ 135

Query: 339 IALLYTEN--QVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRG 379
           I  L  EN    V  LA+  L   A      A+ ++  G+LRG
Sbjct: 136 IIDLIAENAEPQVKELALVYLGITAWSYPAAAIALIGCGALRG 178