Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., multidrug efflux protein from Agrobacterium fabrum C58

 Score =  210 bits (534), Expect = 9e-59
 Identities = 133/443 (30%), Positives = 214/443 (48%), Gaps = 20/443 (4%)

Query: 14  LATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVA 73
           L  P++ A +AQ G+   D ++ G + A  +AA+ +A   +    +FG G  +A+VP+VA
Sbjct: 27  LGIPLIGAQLAQLGIHTTDMVIVGQLGAEKLAAMVLAGQFFFVVFIFGSGFSVAVVPMVA 86

Query: 74  QLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAV 133
           Q  G G        +  G+ +A+   +  + + F  + I+ ++     +A  T  Y+   
Sbjct: 87  QAYGQGDATSARRSLRMGMWVAIAYWLLALPIFFNAERILVYLGQNPNVAALTGHYLAIA 146

Query: 134 IFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCG 193
            F +   LLF  LR     +      + +  I L++N  + ++ V+G FG P +G  G  
Sbjct: 147 KFGLLPALLFYVLRGLVSAIGRAGIILYVTIIMLVMNGLMAYVLVFGHFGLPAMGMNGAA 206

Query: 194 VATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVT 253
           V   IV     + ++ Y+ T +     ++F  F +P    L  + RLG P++  +  EVT
Sbjct: 207 VVAVIVNAFSFIFIVAYVQTREETKKYELFVRFWRPDWHALFEVLRLGLPISITILAEVT 266

Query: 254 LFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGA--- 310
           LFA  ++L+  +G+  +AAH +AL  +S+ FM P+ +  A ++RVG   G+ D K     
Sbjct: 267 LFAAASILMGQIGTVQLAAHGIALQLASIAFMIPLGLSQAATVRVGVARGQGDFKNLIRA 326

Query: 311 -----AIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQC 365
                AIA  + L  G+  A +   L   F +       E   V+A A  L++ A I+Q 
Sbjct: 327 SIMIYAIACGIALCGGILFAAVPEFLAKWFLDP---KLPEAAEVLAYASSLVVIAGIFQL 383

Query: 366 MDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPL--GAKGFWL 423
           +D +Q V AG LRG KD         ISYW +GL          W    PL  G +G W 
Sbjct: 384 VDGIQAVTAGLLRGLKDARIPAMLALISYWPIGLALA-------WTMAFPLGFGGRGVWF 436

Query: 424 GFIIGLSAAALMLGQRLYWLQKQ 446
           GF+IGLS AA++L  R   L K+
Sbjct: 437 GFVIGLSTAAVLLTVRFVLLVKR 459



 Score = 35.8 bits (81), Expect = 3e-06
 Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 25/215 (11%)

Query: 11  LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVP 70
           +++L  P+ I  +A+  +    +I+ G +  + +AA  IA  +   + +  +GL  A   
Sbjct: 250 VLRLGLPISITILAEVTLFAAASILMGQIGTVQLAAHGIALQLASIAFMIPLGLSQAATV 309

Query: 71  VVAQLNGAG------RQHKIPFEVHQGLILA---LLVSVPIIAVLFQTQFIIR-FMDVEE 120
            V    G G      R   + + +  G+ L    L  +VP        +F+ + F+D + 
Sbjct: 310 RVGVARGQGDFKNLIRASIMIYAIACGIALCGGILFAAVP--------EFLAKWFLDPKL 361

Query: 121 AMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSL-TKPAMVIGFIGLL----LNIPLNW 175
             A + + Y  +++     + L   +++ T G+    K A +   + L+    + + L W
Sbjct: 362 PEAAEVLAYASSLVVIAGIFQLVDGIQAVTAGLLRGLKDARIPAMLALISYWPIGLALAW 421

Query: 176 --IFVYGKFGAPELGGVGCGVATAIVYWIMLLLLL 208
              F  G  G     G   G++TA V   +  +LL
Sbjct: 422 TMAFPLGFGGRGVWFGFVIGLSTAAVLLTVRFVLL 456