Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  157 bits (398), Expect = 1e-42
 Identities = 113/424 (26%), Positives = 204/424 (48%), Gaps = 14/424 (3%)

Query: 258 QAQAVIEQIINKLED---AQQQNKDFASAAEVAQQLVTQLNQWSTLAQQHIVQGKQEVTS 314
           Q QA +E+    L+    A  Q +D  +AA  A ++++   Q  TL        K  ++ 
Sbjct: 220 QYQANLEEASTSLQAYRAAVSQYRDSQTAAAAALKIMSA--QGDTLLGH---SDKLTLSQ 274

Query: 315 TISAVTLTQQISGTLLVLAILAVWFGL------RRWIGRALNNITRHLAQLTQHKLNHRL 368
           T+            LL+  +LA+ FGL       R I   LN   +   ++    L+H L
Sbjct: 275 TVVRDADAAHAKQLLLLATVLALIFGLVAAWAITRQIVIPLNQTLQVAQRVASGDLSHNL 334

Query: 369 DLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQA 428
             +   +   +   +  + V   E +  ++     +   AE      EQ++  + +Q   
Sbjct: 335 TSMRQDELGQLQRAMQSMTVGLRELIGGISDGVTQIASAAEQLSAVTEQTSAGVNSQKVE 394

Query: 429 LLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVN 488
              +A  +N++ A+++E+A  + ++   +V A + + +G KV+ +   +++ L T +  +
Sbjct: 395 TDQVATAMNEMAATVQEVARNAEEASEAAVAADQQAREGDKVVGEAIAQIERLATEVGNS 454

Query: 489 DAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLA 548
             AM +L +    I  ++D+I  +A  TNLLALNAAIEAARAGE GRGFAVVADEVR LA
Sbjct: 455 TVAMGDLKRESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLA 514

Query: 549 SDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIR 608
             T K T  I +++  L +   +    +D SR    ++++      S    I R V+ I+
Sbjct: 515 QRTQKSTEEIEELIVGLQSGTQQVATIMDNSRGLTDSSVELPRRAGSALASITRTVSTIQ 574

Query: 609 TRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLH 668
               QI  A E+Q     ++N++V  + +  ++T    +    S+ ++A +  H QA++ 
Sbjct: 575 AMNSQIATAAEQQSAVAEEINRSVLNVRDVSEQTAAASEETAASSTELARLGTHLQALVG 634

Query: 669 KYEL 672
           ++ +
Sbjct: 635 RFRV 638