Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  149 bits (377), Expect = 2e-40
 Identities = 105/369 (28%), Positives = 188/369 (50%), Gaps = 20/369 (5%)

Query: 312 VTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQLTQHKLNHRL--D 369
           +T +++ + L+  ++  + V   + V     RW   +   +   +   T   L  ++  D
Sbjct: 161 LTGSLAGMFLSAPVAIAVAVAVAVPVGVLCSRWRQGSTLRLLHGVEPSTSDALIAQMYSD 220

Query: 370 LVGPQDFQNVAAQLNQVIVSTHESLALVTRNCET-LYQTAELSHGSAEQSNQSLAAQNQA 428
             GPQ      A+L    +S +  L    + C T L  +AE     A QS+Q  +A ++ 
Sbjct: 221 ARGPQ------ARLETAFLSQNARL----KTCLTRLQDSAEQLSALAGQSDQLASASSKG 270

Query: 429 L-------LTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQAL 481
           L         ++A +NQ+ A+ +E+A     +   + +A   + +G +V    ++ ++ L
Sbjct: 271 LDRQRVETEQVSAAVNQMAATTQEVASHVQRTADATQQANVLTGRGREVARDTREAIERL 330

Query: 482 ETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVA 541
              ++     +++L +    I  +VD+I GIAD TNLLALNAAIEAARAGEQGRGFAVVA
Sbjct: 331 SAVVSETGVTVAQLAKDSNEIGSVVDVIKGIADQTNLLALNAAIEAARAGEQGRGFAVVA 390

Query: 542 DEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIE 601
           DEVR+LA  TS+ TT I  ++ +L  +++ + Q+++  +++    +    E     + I 
Sbjct: 391 DEVRQLAQRTSQSTTQIHGLITQLQASSNNAVQSMENGQRQAQEGVAWVLEADQALVGIS 450

Query: 602 RAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAG 661
            AV+HI     QI  ATEEQ     ++++ +  I+E   +T  Q     + ++++   A 
Sbjct: 451 EAVSHITDMTTQIAAATEEQSAVAEEISRNITTIAELADQTSLQAHQSTDLSKELTNTAS 510

Query: 662 HQQAMLHKY 670
            Q A++ ++
Sbjct: 511 TQYALVERF 519