Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  139 bits (350), Expect = 3e-37
 Identities = 99/346 (28%), Positives = 166/346 (47%), Gaps = 17/346 (4%)

Query: 333 AILAVWFGLRRWIGRALNNITRHLAQLTQHKLNHRLDL-VGPQDFQNVAAQLNQVIVSTH 391
           AI   W  +  +IG AL  +     ++ +  L  RL    G  +F  +   L++ + +  
Sbjct: 135 AIFTYW--VATFIGGALWVLYTTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLA 192

Query: 392 ESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSH 451
           E +  V +N  TL  TA       ++S   +  Q  +L ++A  + ++ AS  E++    
Sbjct: 193 ELIVAVKQNSATLRDTAMTFAHEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVS---- 248

Query: 452 DSYTDSVEAAEHSAQGVKVIEQNQQR-------LQALETTLAVNDAAMSELNQRVTSIRE 504
              T S  A E + Q  K +E++QQR       ++ L   +A   +++  LN   T I  
Sbjct: 249 ---TTSQRATEQTEQDTKQVERSQQRVRKAIQDIEQLSRYIAQASSSVETLNTNATQINA 305

Query: 505 MVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNE 564
           ++  I+ I++ TNLLALNAAIEAARAGEQGRGFAVVADEVR LAS T   T  I+ M+ +
Sbjct: 306 VITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQSATVEIQAMIEK 365

Query: 565 LVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRA 624
           L   +    +  +++  +  T+ Q   EV +    I  +   I     QI+ +  EQ   
Sbjct: 366 LQVESQNIAKLTEQTVSQAHTSSQLVSEVGNDVQAIAHSAQLINDLSVQISTSASEQSSV 425

Query: 625 TADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLHKY 670
             D++  ++ I  Q    +R  +   +   ++ +   +   +L +Y
Sbjct: 426 AHDISSELSDIRSQSNTLRRVAEQTSQGVSEITQATRNLGEILARY 471



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 31/166 (18%)

Query: 538 AVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTF 597
           A + D     A +  +    I++  + L + A+   +    + +   T+ +++E+ +   
Sbjct: 203 ATLRDTAMTFAHEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDT 262

Query: 598 MQIERAVAHIRTRVEQITQATEEQKRATADV----------NKAVAQISEQGQETKR-QL 646
            Q+ER+   +R  ++ I Q +    +A++ V          N  +  I+   ++T    L
Sbjct: 263 KQVERSQQRVRKAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLAL 322

Query: 647 DAMLESA-------------EQVAEIAGHQQ-------AMLHKYEL 672
           +A +E+A             ++V  +A   Q       AM+ K ++
Sbjct: 323 NAAIEAARAGEQGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQV 368