Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  151 bits (382), Expect = 7e-41
 Identities = 116/437 (26%), Positives = 208/437 (47%), Gaps = 20/437 (4%)

Query: 250 YEMVLAGFQAQAVIEQIINKLEDAQ-----------QQNKDFASAAEVAQQLVTQLNQWS 298
           ++ VLAG    + + Q  + ++ AQ           + N+    A       V ++ +  
Sbjct: 156 HQQVLAGSANSSALNQFSDLIKSAQAVVNQAKVIGLKYNEGLLGATRSHSHDVEEMFKAF 215

Query: 299 TLAQQHIVQGKQE-VTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLA 357
           +      V  KQ+ +T+T  +VT+        +VL IL V F + R I   ++ +   + 
Sbjct: 216 SKTLTQAVDDKQKTMTTTKLSVTIA-------VVLIILLVIFQISRSINLQVSQLLLVIQ 268

Query: 358 QLTQ-HKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAE 416
           ++ Q + ++ R +L G  +   VA   N ++      ++        LY +    H   E
Sbjct: 269 RIAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMHDELE 328

Query: 417 QSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQ 476
           Q  +    Q++ +  MA ++ Q+ ++I EI+  ++ +     +AA ++ QG  V+    +
Sbjct: 329 QVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVVTTVK 388

Query: 477 RLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRG 536
            +  L +TL  +  ++  LN  V  I   V +I GIA+ TNLLALNAAIEAARAGEQGRG
Sbjct: 389 NIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRG 448

Query: 537 FAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKST 596
           FAVVADEVR LA+ T + T  I  +++ + +  S+    +D    +    L +S ++  +
Sbjct: 449 FAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDES 508

Query: 597 FMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQV 656
             QI R +  I+   ++I  A EEQ      V++++A+++   +   R     L   + V
Sbjct: 509 LQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTEVDTV 568

Query: 657 AEIAGHQQAMLHKYELN 673
           +  A      + ++  N
Sbjct: 569 SRQAHAMDEAVAEFRTN 585



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 50/254 (19%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 72  YGTRSQSEQELNQVLNEWQKLDAQAGDEITRLQQNVQLLSSAE-----AVQQAEQLQREI 126
           Y + S    EL QV+ ++       G   T +QQ V  +S        AV    Q  R  
Sbjct: 317 YSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNA 376

Query: 127 LHFQQLAQSILKLQQLQLSKTAQISEQA-KQFRYGLSSIGPEMGRIASFLAVDNPEAMDA 185
              + +  + +K   L LS T Q S+ +       +  IG  +  I       N  A++A
Sbjct: 377 EQGRSVVVTTVKNIDL-LSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNA 435

Query: 186 ANRFTASASAMESAFLLLFIEEEMSAAQKYRQELKNRVAGLELAFDDFKEWYPEIKDYAS 245
           A    A+ +  +     +  +E  S A +  Q  +     +     + +    ++ D   
Sbjct: 436 A--IEAARAGEQGRGFAVVADEVRSLATRTHQSTEE----ITRVVSNIQSQMSQVVDDID 489

Query: 246 L--TAPYEMVLAGFQAQAVIEQIINKLEDAQQQNKDFASAAE----VAQQLVTQLNQWST 299
           L      E + A  Q    ++QI+  +   Q  ++  A+A E    V   +   + + +T
Sbjct: 490 LCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNT 549

Query: 300 LAQQHIVQGKQEVT 313
           +++ ++   +Q +T
Sbjct: 550 ISENNMRSAQQCLT 563