Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 661 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25

 Score =  155 bits (392), Expect = 6e-42
 Identities = 161/685 (23%), Positives = 301/685 (43%), Gaps = 43/685 (6%)

Query: 7   LSLTQTLGAVFLCITILMISLSVTSLRGIERVGAQFNQLSEQALPFA------------L 54
           +++ Q +   F  + +L++ ++  S +  + + ++   ++ Q+ P +             
Sbjct: 1   MTILQRVIGGFAVLVLLLLIMAGISYQNTQSISSRLTIITGQSAPLSRAASELYVHILRA 60

Query: 55  NNAALTQNFLEQVKYLGYGTR--SQSEQELNQVLNEWQKLDAQAGDEITRLQQNVQLLSS 112
           N A L        K +  G R  ++S  + NQ+L+       +       L Q  Q ++ 
Sbjct: 61  NQALLAIQISTDPKQIEDGKRPFTESIAQFNQLLDSTAAYTGEHEALRANLAQQRQQVA- 119

Query: 113 AEAVQQAEQLQREILHFQQLAQSILKLQQLQLSKTAQISEQAKQFRYGLSSIG-PEMGRI 171
           A A Q    +   + H QQLA +  KLQ    ++  Q++   + +     S+G P+    
Sbjct: 120 AYAEQAQALMTSHMQHVQQLALT-RKLQGYSSAQAMQLTSYLRDYIAHARSVGEPQQVAA 178

Query: 172 ASFLAVDNPEAMDAANRFTASASAMESAFLLLFIEEEMSAAQKYRQELKNRVAGLELAFD 231
           A  L ++  ++ D     T + +  +   +L   +E +S   +    +  RV  +     
Sbjct: 179 AEKLLLEVNKSYDGFAAHTVTPAIDKLQRVLNLQDEVISTRAQALTAIDPRVGRIAGVMV 238

Query: 232 DFKEWYPEIKDYASLTAPYEMVLAGFQAQAVIEQIINKLEDAQQQNKDFASAAEVAQQLV 291
           +        +    LTA   +    FQA     Q+  KL    QQ ++   AA  A   +
Sbjct: 239 N--------RLLTDLTAADGL----FQAY----QVEAKLAAQVQQQRNAVEAALKAT--L 280

Query: 292 TQLNQWSTLAQQHIVQGKQEVTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNN 351
            ++ ++ + + +   Q  Q   +TI        I+  L VLA + +   +   + R L  
Sbjct: 281 DRIGEFGSQSLEVANQASQSANATIGTSRSLLLIACVLAVLAAVLIGTWVAFSLRRPLAA 340

Query: 352 ITRHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELS 411
               L  LT   +    D+    +F  +   LN++  +  ++   +  + + L  TA  +
Sbjct: 341 FREVLKTLTAGDMRVSFDVSRKDEFGELGGYLNELTAALRKTFRELIGSADALAVTAGSN 400

Query: 412 HGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSY--TDSVEAAEHSAQG-- 467
             ++EQ+ + +  Q   L + A+ + Q+++++ E+A  + D+    D      H  Q   
Sbjct: 401 ALNSEQTTRVVDEQKDRLQSAASAMTQMESTVEEVARRAQDTRQAVDDTSELTHKVQARV 460

Query: 468 VKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEA 527
            + I   +Q+   +     V D    EL +   +I  +V  I  IA+ TNLLALNAAIEA
Sbjct: 461 AETIVNIRQQADQVNKATQVTD----ELQKYGQNIEGIVVAIRTIAEQTNLLALNAAIEA 516

Query: 528 ARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTAL 587
           ARAGEQGRGFAVVADEVR LAS T   T+ I+DM+  +          ++ES+ +    +
Sbjct: 517 ARAGEQGRGFAVVADEVRSLASRTQTSTSEIQDMIGLMQEKIHSVVHVMNESQAQSTQCV 576

Query: 588 QSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLD 647
             +       + +  +V  IR    QI  ATEEQ     + ++ V QI++  Q+T +  +
Sbjct: 577 SLASGAGDLLLSMSDSVDSIRDMNIQIAAATEEQSATVQETSRMVIQINDSAQQTAQGAE 636

Query: 648 AMLESAEQVAEIAGHQQAMLHKYEL 672
               S+ +++++A  Q+ +LH + +
Sbjct: 637 QSAISSHELSDMAKVQRELLHHFSV 661