Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., Methyl-accepting chemotaxis protein 4 from Alteromonas macleodii MIT1002

 Score =  155 bits (393), Expect = 4e-42
 Identities = 100/328 (30%), Positives = 171/328 (52%), Gaps = 5/328 (1%)

Query: 330 LVLAILAVWFGLRRWIGRALNNITRHLAQLTQHK--LNHRLDLVGPQDFQNVAAQLNQVI 387
           +VL ++ V+  +   I + +  ++  +  ++Q +  L   L   G  +   +A   N+  
Sbjct: 197 IVLVVVLVYV-IGGSIVKPVQEVSERMKDISQGEGDLTRSLPETGQDEVTRLARYFNEYT 255

Query: 388 VSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIA 447
                SL  +  N  +L Q AEL   S++ SN     QN+ +L +AA + ++   I E++
Sbjct: 256 EKMRHSLLGIRENINSLTQQAELVETSSKNSNAQAQTQNENMLQVAAAMEEMTTQINEVS 315

Query: 448 GVSHDSYTDSVEAAEHSAQ-GVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMV 506
             + DS   S  +A  + Q G  V++     +++L + +    +A++EL  +  SI  ++
Sbjct: 316 N-NADSAEKSTSSARGNVQNGASVVDSTVNDIRSLTSDIESVSSAVTELAAQTESIGAVL 374

Query: 507 DMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELV 566
           D+I GIA+ TNLLALNAAIEAARAGEQGRGFAVVADEVR LAS T + T  I+ M+ +L 
Sbjct: 375 DVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTGQSTDEIQAMIEKLQ 434

Query: 567 TAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATA 626
           + A  +  AV  S+      + ++ +      + +R +  I     +I +ATE+Q  A  
Sbjct: 435 SNAKSAVDAVKVSQSASTKTVDNAIQANQNLQEADRLMTEIADMSSEIARATEQQAEAAT 494

Query: 627 DVNKAVAQISEQGQETKRQLDAMLESAE 654
           + N  +  +S     + R  D +  +++
Sbjct: 495 EANMRINALSGAADSSLRTADELAAASQ 522



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 59/276 (21%), Positives = 102/276 (36%), Gaps = 25/276 (9%)

Query: 258 QAQAVIEQIINKLEDAQQQNKDFASAAEVAQQLVTQLNQWS----------TLAQQHIVQ 307
           QA+ V     N    AQ QN++    A   +++ TQ+N+ S          + A+ ++  
Sbjct: 275 QAELVETSSKNSNAQAQTQNENMLQVAAAMEEMTTQINEVSNNADSAEKSTSSARGNVQN 334

Query: 308 GKQEVTSTISAV-TLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQLTQHKLNH 366
           G   V ST++ + +LT  I      +  LA        IG  L+ I     Q     LN 
Sbjct: 335 GASVVDSTVNDIRSLTSDIESVSSAVTELA---AQTESIGAVLDVIRGIAEQTNLLALNA 391

Query: 367 RLDL--VGPQ--DFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSL 422
            ++    G Q   F  VA ++  +   T +S   +    E L   A+ +  + + S  + 
Sbjct: 392 AIEAARAGEQGRGFAVVADEVRTLASRTGQSTDEIQAMIEKLQSNAKSAVDAVKVSQSAS 451

Query: 423 AAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALE 482
                  +     + + D  + EIA +S        E A  + Q  +   +   R+ AL 
Sbjct: 452 TKTVDNAIQANQNLQEADRLMTEIADMSS-------EIARATEQQAEAATEANMRINALS 504

Query: 483 TTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNL 518
                +     EL     ++R     I  IA+   L
Sbjct: 505 GAADSSLRTADELAAASQALRASCIAIMDIANRFKL 540



 Score = 32.0 bits (71), Expect = 8e-05
 Identities = 37/225 (16%), Positives = 83/225 (36%), Gaps = 19/225 (8%)

Query: 468 VKVIEQNQQRLQAL-----ETTLAVNDAAMSELNQRVTSIREMVDMIS----GIADSTNL 518
           VK +++  +R++ +     + T ++ +    E+ +      E  + +     GI ++ N 
Sbjct: 212 VKPVQEVSERMKDISQGEGDLTRSLPETGQDEVTRLARYFNEYTEKMRHSLLGIRENINS 271

Query: 519 LALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQA--- 575
           L   A +    +           + + ++A+   + TT I ++ N   +A   +  A   
Sbjct: 272 LTQQAELVETSSKNSNAQAQTQNENMLQVAAAMEEMTTQINEVSNNADSAEKSTSSARGN 331

Query: 576 -------VDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADV 628
                  VD +  ++ +     E V S   ++      I   ++ I    E+      + 
Sbjct: 332 VQNGASVVDSTVNDIRSLTSDIESVSSAVTELAAQTESIGAVLDVIRGIAEQTNLLALNA 391

Query: 629 NKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLHKYELN 673
               A+  EQG+      D +   A +  +     QAM+ K + N
Sbjct: 392 AIEAARAGEQGRGFAVVADEVRTLASRTGQSTDEIQAMIEKLQSN 436