Pairwise Alignments

Query, 232 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score = 67.8 bits (164), Expect = 2e-16
 Identities = 47/220 (21%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 13  LLVSLDPKLWEIVAVSFSVSLTAIALVLIPSVVLSFVLAYTNFRGKWTLLSLINTLQAVP 72
           + ++ D +    + VSF  +  A  +  +  V++++VL    F G+  + ++++   A+P
Sbjct: 56  IAIATDSRTLNALRVSFGTAFIAALVNAVFGVIVAWVLTRYRFPGRRFVDAIVDLPFALP 115

Query: 73  TVVIGLLLYMLLSRAGPLGDW------QMLFTQQAMILGQALICFPILVAMMHGALQSTD 126
           T V G+ L  L +  G +G        ++ FT   +++    I  P +V  +   ++  D
Sbjct: 116 TAVAGIALTTLYANRGWVGSLFEPFGIKIAFTPTGIVIALIFIGLPFVVRTVQPVMEEID 175

Query: 127 RRSLETSMTLGASVPRLFATLVWEARFPLMAATIA-GFSRIVTEVGCSMMVGGNIMGLTR 185
           R+  E + TLGA+  +    ++  +  P +    A  F+R V E G  + + GNI  ++ 
Sbjct: 176 RQVEEVAATLGANRFQTITRVLLPSLTPAILTGFALAFARGVGEYGSVIFIAGNIPYVSE 235

Query: 186 NIPTAISLESNKGAFAQGVALGMVLLALALGLNFLLSSLR 225
             P  I +   +  +A    +  ++L ++  + FL++ ++
Sbjct: 236 IAPLLIVIRLEEFNYAAATGIATIMLIISFAMLFLINLIQ 275