Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Regulatory protein AtoC from Xanthobacter sp. DMC5

 Score =  281 bits (720), Expect = 3e-80
 Identities = 170/465 (36%), Positives = 259/465 (55%), Gaps = 24/465 (5%)

Query: 15  AFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSG 74
           A  +L+VDDEV    VL+ AL++        +++ +A         DL++ D+ +P R G
Sbjct: 5   AAKILIVDDEVRHGEVLEAALAERGFEAVSTNTVAKALAYCASQPVDLVLSDLRMPDRGG 64

Query: 75  IEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR 134
            +   A         VI MT +A +  A+  +K GA D++ KP +L+ ++  + R +  +
Sbjct: 65  ADLLRALKHEQPELPVIIMTAYASVRGAVDLVKDGAFDYVAKPLDLDDVVATIARALRLK 124

Query: 135 L----NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKE 190
                N RL+  L+   +R+    ++G S     + +++ + APSRASVL+ GESGTGKE
Sbjct: 125 AVESENSRLRSELE---ERYRFDNLLGESAVFHHVLRQVTEVAPSRASVLLLGESGTGKE 181

Query: 191 LVARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGT 249
           LVAR IH  S R+  PFV +NC AI   L+ESELFGH  GAFTGA   REG F  AN GT
Sbjct: 182 LVARAIHYNSPRRDLPFVAVNCAAIPETLIESELFGHVKGAFTGATGVREGRFAAANQGT 241

Query: 250 LFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRG 309
           LFLDEI +MPL +QA +LR L++++  PVGS K V+VDVR++AAT+++LQ+E+  G FR 
Sbjct: 242 LFLDEIADMPLPVQAKVLRALQEQSFEPVGSSKSVSVDVRIIAATHKDLQKEIAAGTFRM 301

Query: 310 DLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPG 369
           DLYYRL V  I + PLRER  D+  L   F      ++G  +     E  + +  Y WPG
Sbjct: 302 DLYYRLAVFPITLPPLRERTDDIVLLADHFLAAATRDMGKRVKGLTPEAQAMLTRYRWPG 361

Query: 370 NIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGY 429
           N+REL+N +ER  ++ +             +    ++ + ++N        +V   +L  
Sbjct: 362 NVRELQNCMERAAIVARG-----------DLVGPGDLLLFEANGD-----TDVQSHTLNG 405

Query: 430 PNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
             D  LS +E+  + Q +    G ++ AA  LG+  ++L  + K+
Sbjct: 406 DLDSELSRIEREFVLQALKDSGGVQARAAEKLGITERSLWHRIKK 450