Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  281 bits (720), Expect = 3e-80
 Identities = 179/471 (38%), Positives = 273/471 (57%), Gaps = 28/471 (5%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+V+DE  ++  L++ L +   +V  A S++EA+       +DL++ D+ LPG  G E 
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTEL 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            +          V+ MT +A L +A+ ++K+GA D+I KPF+ ++MLQAV R +  R + 
Sbjct: 64  IKL----GQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQSP 119

Query: 138 RLQYALQRDFQRHCTTQ----------IIGSSVQTELLKQRIVQFAPSRASVLIEGESGT 187
               A QR   +               IIGS    + L  +I + AP+ ++VLI+GESGT
Sbjct: 120 SSAPAEQRPAGKAADKPGVDNSNGEIGIIGSCPPMQDLYGKIRKVAPTDSNVLIQGESGT 179

Query: 188 GKELVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVAN 246
           GKELVAR +H  S R + P + +NC AI   L+ESELFGH  GAFTGA   R GL   A+
Sbjct: 180 GKELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAAD 239

Query: 247 GGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGR 306
           GGTLFLDEIGE+PL  QA LLRVL++  +R VGS +   VDVR++AAT+R+L+   + G+
Sbjct: 240 GGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQ 299

Query: 307 FRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYD 366
           FR DLYYRL+V+ +++  LRER  D++E+   F     A +     K+A +   +++ Y 
Sbjct: 300 FREDLYYRLHVIALKLPALRERGADVNEIAHAFLLRQSARINRTDLKFAPDAEQAIRHYS 359

Query: 367 WPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSE-ISLGDNVTQP 425
           WPGN+REL+N +ER ++L + P     EL G+      ++ +S   + + I L  +    
Sbjct: 360 WPGNVRELENAVERAVILSESP-EISAELLGI------DIELSDLEDDDFIGLAPSQGGS 412

Query: 426 SLGYPNDWPLSAVEKAHIQQIVALHEGN--KSAAARDLGVARKTL-ERKYK 473
           +  +     LS  +  + Q  V  H+ +  ++  AR LGV+RK L ER+ +
Sbjct: 413 NTSHEPTEDLSLED--YFQHFVLEHQDHMTETELARKLGVSRKCLWERRQR 461