Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas simiae WCS417

 Score =  265 bits (677), Expect = 2e-75
 Identities = 147/375 (39%), Positives = 228/375 (60%), Gaps = 4/375 (1%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           +V++VDDE  ++  +++ LS     V L S  EE      +    +++ D+ +PG SG+E
Sbjct: 4   AVIVVDDEASIRTAVEQWLSLSGFEVQLFSRAEECLAQLPKDFPGVILSDVRMPGLSGLE 63

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR-- 134
                   D    VI +TG  D+  A+ A++ GA DF+ KPF+ + +L +++R ++KR  
Sbjct: 64  LLAEVQRRDADLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPDALLNSLRRALDKRGL 123

Query: 135 LNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
           + E  +   Q D +    + ++G S   + L+++++  A    +VLI GE+G+GKELVAR
Sbjct: 124 ILENRRLHQQADHRAQLESTLLGVSRGLQTLRRQVLDLASLPVNVLIRGETGSGKELVAR 183

Query: 195 GIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            +H+   R + PFV +NC AI  +L E+ELFGH SGAFTGA+  R G    A+GGTLFLD
Sbjct: 184 CLHDFGPRAKKPFVALNCAAIPEQLFEAELFGHESGAFTGAQGKRIGKLEYAHGGTLFLD 243

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           EI  MPL  Q  LLRVL+++ +  +GS + ++VD+R++AAT  +L +E   GRFR DL Y
Sbjct: 244 EIESMPLAQQVKLLRVLQEQKLERLGSNQSIHVDLRIIAATKPDLLEEARAGRFREDLAY 303

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLNV ++ + PLRER++D+  L   F +     LG  +   +   +  +  +DWPGN+RE
Sbjct: 304 RLNVAQLRLPPLRERREDIPLLFDHFAQSAAERLGRSVEPLSGAQLGRLLSHDWPGNVRE 363

Query: 374 LKNLIERCLL-LGKP 387
           L N+ ER +L LG+P
Sbjct: 364 LANVAERQVLGLGEP 378