Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  261 bits (668), Expect = 3e-74
 Identities = 172/475 (36%), Positives = 253/475 (53%), Gaps = 56/475 (11%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLAS----SIEEAEVLRGEHHYD---LLILDINLP 70
           V+L+DD+  ++  L + L       DLA     ++ EA  L      D   +++ DI +P
Sbjct: 9   VVLIDDDPHLRQALCQTL-------DLAGLNVLTLGEATGLTARLSRDWPGVVVSDIRMP 61

Query: 71  GRSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRC 130
           G  G+E        D    V+ +TG  D+  A+ A++ GA DF+ KPF  + +L +V+R 
Sbjct: 62  GMDGLELLAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRA 121

Query: 131 MNKRL----NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESG 186
           +  R     N  L+ AL    ++  +T+++G S Q   L+++I   A +RA VLI GE+G
Sbjct: 122 LALRRLVLDNRSLRLALSD--RQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGETG 179

Query: 187 TGKELVARGIHEASGRQ-GPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVA 245
            GKE+VAR +H+ S R+ GPFV IN GA+A  ++ESELFGH  GAFTGA+K R G F  A
Sbjct: 180 AGKEVVARALHDLSSRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFA 239

Query: 246 NGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENG 305
           NGGTLFLDEI  M L +Q  LLR+L++R V  +G  + + +D+R++AAT  +L+Q  + G
Sbjct: 240 NGGTLFLDEIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQG 299

Query: 306 RFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDY 365
           RFR DLYYRLNV  + + PLRER +D   L   F     +  G+P+ +      + +  +
Sbjct: 300 RFRADLYYRLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLRH 359

Query: 366 DWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQP 425
            WPGN+REL+N  ER  L             GL                E++L +    P
Sbjct: 360 SWPGNVRELQNAAERFAL-------------GL----------------ELALDNTPDNP 390

Query: 426 SLGYPNDWP------LSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
           S G     P      +   EK+ I   +     +  + A  LGV RKTL  K ++
Sbjct: 391 SAGTLTSTPGGLSEQVEQFEKSLIAAELTRPHSSMRSLAEALGVPRKTLHDKLRK 445