Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  271 bits (693), Expect = 3e-77
 Identities = 172/469 (36%), Positives = 260/469 (55%), Gaps = 35/469 (7%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           +VL+V+D+  + L  ++AL+          S EEA    GE+   ++I DI LPG  G+E
Sbjct: 13  TVLIVEDDPHVLLGCQQALALEDIPSVGVGSAEEALKRIGENFAGIVISDIRLPGIDGLE 72

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
                   D    V+ +TG  D+  A+ A++ GA DF+ KPF+ E+++   +R + +R  
Sbjct: 73  LLTRLKALDKSLPVVLITGHGDISMAVGAMRNGAYDFMEKPFSPERLVDVARRALEQRGL 132

Query: 137 ERLQYALQRDFQRHCTTQ--IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
            R  ++L+R      + +  IIG S   + L++ I   A + A+VLIEGE+GTGKELVAR
Sbjct: 133 AREVWSLRRQLAERDSLEGRIIGRSPAMQNLRELIANVADTSANVLIEGETGTGKELVAR 192

Query: 195 GIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            +H+ S R    FV +NCG +   L ESE+FGH + AFTGA K R G    A+ GTLFLD
Sbjct: 193 CLHDFSRRHAHQFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHAHEGTLFLD 252

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           E+  MP+ +Q  LLRVL++R +  +GS + V VD RV+AAT  +L +     +FR DLYY
Sbjct: 253 EVESMPINLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDELSRANQFRSDLYY 312

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLNV+ +E+ PLRER++D+ +L   F +         +P+   + +SS+  +DWPGN+RE
Sbjct: 313 RLNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRSVPELDNQTLSSLMSHDWPGNVRE 372

Query: 374 LKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           L+N+ ER  L             GLP +        +S  S  S G   T+         
Sbjct: 373 LRNVAERFAL-------------GLPAF-------KKSGTSSGSQGLAFTE--------- 403

Query: 434 PLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWESEDLSH 482
            + A E+  +   +    GN + A+++LG+A+ TL  K K++    LSH
Sbjct: 404 AVEAFERNLLNDALQRSGGNLTQASQELGMAKTTLFDKVKKY---GLSH 449