Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  276 bits (705), Expect = 1e-78
 Identities = 171/460 (37%), Positives = 257/460 (55%), Gaps = 10/460 (2%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           ++L+VDDE  +  +L  AL +   +V +A +   A  +  +   DL+I D  +PG  G  
Sbjct: 4   NILVVDDEPKLCDLLASALGQNDVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMDGPA 63

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
                        VI MT ++ ++ A+ +++ GA D+I KPF+++++   V + +  R  
Sbjct: 64  LLAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQFRDI 123

Query: 137 ERLQYALQRDFQRHCT-TQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARG 195
            R    L+ +   H     ++G S     + Q +     S A++L+ GESGTGKE+VAR 
Sbjct: 124 MRDNARLRAELDEHAQFDSLVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARA 183

Query: 196 IHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDE 254
           IH+   R   PFV +NC AI   LLESE+FGH  GAFTGA   R G F+ A+ GTLFLDE
Sbjct: 184 IHKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDE 243

Query: 255 IGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYR 314
           +G+MPL +QA +LR L++R + PVG  +E  VDVRV+AATN+NL   V N  FR DLYYR
Sbjct: 244 VGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLDAVANKEFREDLYYR 303

Query: 315 LNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIREL 374
           LNV  I +  LRER +D+  L   F + L A  G  +  ++ E + +M  Y WPGNIREL
Sbjct: 304 LNVFPIPLPSLRERVEDIAPLARHFAQTLSATAGKRITGFSAEALQAMAAYHWPGNIREL 363

Query: 375 KNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWP 434
           +N +ER  ++   P     +L G    ++P    +Q + + I L D    P +    D  
Sbjct: 364 QNCVERATIVAASPVIEDIDLPGYLFASKP----NQGDVTAI-LSDG---PGIPQDLDAA 415

Query: 435 LSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
           L+ VEKA+I   +    G ++AAA  +G++ ++   + K+
Sbjct: 416 LAEVEKAYILAALQESNGVQAAAAAKIGISERSFWYRLKK 455