Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., Two-component system response regulator protein from Variovorax sp. SCN45

 Score =  270 bits (689), Expect = 1e-76
 Identities = 169/485 (34%), Positives = 262/485 (54%), Gaps = 41/485 (8%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L++DDE  ++ + +  L +   RV+ A S+ EA        +D +I D+ LP   G+E 
Sbjct: 15  ILVIDDEPDLRTLYELTLLREGYRVEAAGSVSEAWQHLEAGRFDAVITDMRLPDGQGMEI 74

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
                        + MT +   E A+ ALK GA D++ KP +L+Q    V   +  R N 
Sbjct: 75  IHRIQKDQRSERCVVMTAYGSAENAVEALKAGAFDYLTKPVDLKQFRAVVASAVQAR-NA 133

Query: 138 RLQYA---------------LQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIE 182
             Q A               +  D       +++G S    L+K RI + A   A VL+ 
Sbjct: 134 AQQPAKSVPVVAAGNNDAPLVTSDSGVAALDRLVGDSEPMRLVKSRIAKVARGMAPVLVR 193

Query: 183 GESGTGKELVARGIHEASGRQ-GPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGL 241
           GESGTGKELVAR +H  S R  GPFV +NCGAI   LLE+E FG   G++TG+ + R+G 
Sbjct: 194 GESGTGKELVARAVHACSQRSDGPFVAVNCGAIPENLLEAEFFGARKGSYTGSAQDRDGY 253

Query: 242 FRVANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQE 301
           F+ A GGTLFLDEIG++PL MQ+ LLR +++R+VR +GS +E  VDVR+V+AT+++L  E
Sbjct: 254 FQAARGGTLFLDEIGDLPLAMQSKLLRAIQERSVRSIGSTQEDTVDVRIVSATHKDLHSE 313

Query: 302 VENGRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISS 361
           V+ GRFR DL+YRLNV++I V  LR+R++DL  L       +  + GMP+P  + + +  
Sbjct: 314 VQAGRFRQDLFYRLNVIEIAVPALRDRREDLPALCAALLSRIAHDAGMPVPHLSDDLLRR 373

Query: 362 MQDYDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDN 421
           +  +   GN+REL+NL+ R + L      +   + G    AE       + ++   L   
Sbjct: 374 LGMHPLDGNVRELENLLHRAVALNDGDELHLDLMGGFTPSAE------AAASAPAPLMPE 427

Query: 422 VTQPSLGYPNDWPLSAVE----------KAHIQQ------IVALHEG--NKSAAARDLGV 463
           +T P++  P   P++  +          +A++ Q      + ALH+   N++AAA  LG+
Sbjct: 428 ITTPAMLMPAPAPVAPPKPAPPPLPSDLQAYLDQQEREILVRALHDSGFNRTAAAARLGM 487

Query: 464 ARKTL 468
           + + +
Sbjct: 488 SLRQI 492