Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Two-component system response regulator protein from Variovorax sp. SCN45

 Score =  261 bits (668), Expect = 3e-74
 Identities = 174/465 (37%), Positives = 248/465 (53%), Gaps = 22/465 (4%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDD+   +  L + L          +S  EA        +D + LD  +PG  G++ 
Sbjct: 4   LLIVDDDDAFRDTLAETLQGLGHETVAVASGAEAVDTASRQRFDAVFLDHRMPGMDGLQT 63

Query: 78  EEAFTDPDHRAD-VIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
             A      R   VI +T F+     I A++LGA D + KP + E + + +QR + +   
Sbjct: 64  LAALQARMARLPPVIVLTAFSSAGNTIEAMRLGAFDHLAKPISREAVREVLQRALQQHTA 123

Query: 137 ERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
                 + +D      T +IG S     + +RI   A +   VL+ GE+GTGKE+VAR +
Sbjct: 124 ASSAATVTQDDDDG--TDLIGPSQAMREVHKRIGLAAANSMPVLVLGETGTGKEMVARAL 181

Query: 197 HEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
           H  S R G PFV +NC AI  ELLESELFGH  GAFTGA   R G FR A+GG L LDEI
Sbjct: 182 HRHSARAGRPFVAVNCSAIPKELLESELFGHVRGAFTGATGERPGCFRAADGGVLLLDEI 241

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           G+M L +QA +LR L++  V P+GS + V VDVRVVAAT+R+L   V  GRFR DL YRL
Sbjct: 242 GDMSLDVQAKILRALQEGEVTPLGSHRTVKVDVRVVAATHRDLAAAVREGRFREDLLYRL 301

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTK---MLCAELGMPMPKWAYEDISSMQDYDWPGNIR 372
           +VL I + PLRER  D+  L   F +   M  A   +P    + E    +  + WPGN+R
Sbjct: 302 DVLSIRMPPLRERLADIIPLAEHFLRRAAMQGAPDAVPNKALSAEAAQRLLSHPWPGNVR 361

Query: 373 ELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPND 432
           EL+N++ERC  L +      R + G    A+ ++ +  S   E S     T P+     +
Sbjct: 362 ELRNVMERCHALVR-----HRVIGG----ADLDLALGASPAGEAS----ATLPADWLEGE 408

Query: 433 WP--LSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
            P  +  +E+  I   +A  +GN++  AR LG+ R+ L RK  ++
Sbjct: 409 LPAAVERLERLLIAHALAQTQGNRAETARRLGIHRQLLYRKLAQY 453