Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  267 bits (683), Expect = 5e-76
 Identities = 171/473 (36%), Positives = 249/473 (52%), Gaps = 30/473 (6%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           V +VDD+  ++ V++K LS    + +  +  E   +       D+L+ DI +PG  GI  
Sbjct: 6   VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALERETPDVLVSDIRMPGMDGIAL 65

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
                       VI MT  +DL+ A++A + GA +++ KPF++++ L  V+R +     +
Sbjct: 66  LNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQEQ 125

Query: 138 RLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGIH 197
           R      R  + +   +IIG +   + + + I + + S  SVLI GESGTGKELVA  +H
Sbjct: 126 RK--TSHRPSENYSAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGESGTGKELVAHALH 183

Query: 198 EASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEIG 256
             S R Q PF+ +N  AI  +L+ESELFGH  GAFTGA   R+G F  ANGGTLFLDEIG
Sbjct: 184 RHSPRAQKPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQANGGTLFLDEIG 243

Query: 257 EMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRLN 316
           +MPL +Q  LLRVL       VG    + VDVR+VAAT++NL++ V  G+FR DL++RLN
Sbjct: 244 DMPLDIQTRLLRVLADGQFYRVGGHVAIKVDVRIVAATHQNLEKLVHQGKFREDLFHRLN 303

Query: 317 VLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELKN 376
           V++I +  LRER+QD+ +L   F  +   ELG+ M       +  +   DWPGN+R+L+N
Sbjct: 304 VIRIHIPSLRERRQDIEKLTKHFLALAAKELGVEMKTLNPRTVDILTKLDWPGNVRQLEN 363

Query: 377 LIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPLS 436
           +     ++         +L        P   +S+   S     D   Q  L     W  S
Sbjct: 364 MCRWLTVMASGSEVLPSDL--------PSELLSERKASHFD-NDISWQKQL---ETWAKS 411

Query: 437 AVEKAHIQQI-------------VALH--EGNKSAAARDLGVARKTLERKYKE 474
           A+     + +              ALH   G+K  AA+ LG  R TL RK KE
Sbjct: 412 ALASGETELLAYALPEFERILLEAALHHTNGHKQEAAKVLGWGRNTLTRKLKE 464