Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  279 bits (713), Expect = 2e-79
 Identities = 173/470 (36%), Positives = 255/470 (54%), Gaps = 32/470 (6%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLIL-DINLPGRSGIE 76
           V L+DDE  +++ L ++           +S+EEA +        L+I+ DI LPG SG  
Sbjct: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
              +    D    VI +TG  D+  A+ A+  GA DFI KPF  E+++  V R + KR  
Sbjct: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123

Query: 137 ERLQYALQRDFQRHCTT--QIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
                 L+R  +   T   +IIG +   + L+  I Q A ++A +L+ GE+GTGKELVAR
Sbjct: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183

Query: 195 GIHEASGRQGP-FVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            +HE S R+   FV INCGA+   L+ESEL+GH  GAFTGA   R G F  A GGTLFLD
Sbjct: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           EI  MP+  Q  LLRVL++R +  +GS + + +D+RV+AAT  +L+Q    G+FR DLYY
Sbjct: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLN++ + + PLRER++D+  L   F  +  A  G         D+ S+  +DWPGN+RE
Sbjct: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363

Query: 374 LKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           L+N  ER +LLGK           L  +AE      +  +  + L + V +         
Sbjct: 364 LRNAAERYVLLGK-----------LAQFAESH----EPKSKLLGLNEQVAE--------- 399

Query: 434 PLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWESEDLSHE 483
                EK+ ++Q +    G+  A    L + RKTL  K ++++ +  S++
Sbjct: 400 ----FEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLDKESYK 445