Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., Nitrogen regulation protein NR(I) from Pseudomonas putida KT2440

 Score =  281 bits (719), Expect = 3e-80
 Identities = 179/476 (37%), Positives = 274/476 (57%), Gaps = 32/476 (6%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+V+DE  ++  L++ L +   +V  A S++EA+       +DL++ D+ LPG  G E 
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIATFDLIVSDLRLPGAPGTEL 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            +          V+ MT +A L +A+ ++K+GA D+I KPF+ ++MLQAV R +  R N 
Sbjct: 64  IKL----GQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQNA 119

Query: 138 RLQY-----------ALQRDFQRHCTTQ----IIGSSVQTELLKQRIVQFAPSRASVLIE 182
                          A   D     T      IIGS    + +  +I + AP+ ++VLI+
Sbjct: 120 PAAAPPAEPRASNGKATASDKGSAATANGEIGIIGSCQPMQDMYSKIRKVAPTDSNVLIQ 179

Query: 183 GESGTGKELVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGL 241
           GESGTGKELVAR +H  S R + P + +NC AI   L+ESELFGH  GAFTGA   R GL
Sbjct: 180 GESGTGKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGL 239

Query: 242 FRVANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQE 301
              A+GGTLFLDEIGE+PL  QA LLRVL++  +R VGS +   VDVR++AAT+R+L+  
Sbjct: 240 VEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKNL 299

Query: 302 VENGRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISS 361
            + G+FR DLYYRL+V+ +++  LRER  D++E+   F     A +G     ++ E   +
Sbjct: 300 AKAGQFREDLYYRLHVIALKLPALRERGSDVNEIANVFLARQSARIGRDDLHFSAEAEQA 359

Query: 362 MQDYDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDN 421
           ++ Y WPGN+REL+N +ER ++L +  A    EL G+      ++ +S  +  +I L + 
Sbjct: 360 IRHYSWPGNVRELENAVERAVILSE-SAEISAELLGI------DIELSDLDEDDI-LDNA 411

Query: 422 VTQPSLGYPNDWPLSAVE-KAHIQQIVALHEGN--KSAAARDLGVARKTL-ERKYK 473
           +   + G  +  P   +  + + Q  V  H+ +  ++  AR LGV+RK L ER+ +
Sbjct: 412 LVVANAGNASHEPTEDLSLEDYFQHFVLEHQDHMTETELARKLGVSRKCLWERRQR 467