Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  265 bits (676), Expect = 3e-75
 Identities = 148/377 (39%), Positives = 224/377 (59%), Gaps = 8/377 (2%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           SV++VDDE  ++  +++ LS     V+L +  E       +H   ++I D+ +PG  G++
Sbjct: 4   SVIVVDDEASIRTAVEQWLSLSGFSVELFARAEACLAHLPQHFPGVIISDVRMPGMDGLQ 63

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRL- 135
             E     D    VI +TG  D+  A+ A++ GA DF+ KPF  + +L +++R + KR  
Sbjct: 64  LLERLQANDPDLPVILLTGHGDVPMAVEAMRSGAYDFLEKPFTPQDLLGSLRRALEKRQL 123

Query: 136 ---NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
              N RL    Q D +      ++G S   + L+++++  A    +VLI GE+G+GKE V
Sbjct: 124 VLENRRLHE--QADLKSRLEGTLLGMSQGLQQLRRQVLDLAGLPVNVLIRGETGSGKERV 181

Query: 193 ARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           AR +H+   R   PFV +NC AI   L E+ELFGH SGAFTGA+  R G    ANGGT+F
Sbjct: 182 ARCLHDFGPRAAKPFVALNCAAIPESLFEAELFGHESGAFTGAQGKRIGKLEYANGGTVF 241

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
           LDEI  MPL  QA LLRV++++ +  +G+ + ++VD+R++AAT  +L +E   GRFR DL
Sbjct: 242 LDEIESMPLAQQAKLLRVIQEQKLERLGANQSISVDLRIIAATKPDLLEEARAGRFREDL 301

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
            YRLNV ++ ++PLRER++D+  L   F +    +LG   P  +   ++ +  +DWPGN+
Sbjct: 302 AYRLNVAELRLAPLRERREDIPLLFEHFARAAGEKLGRAAPPLSGAQLAQLLSHDWPGNV 361

Query: 372 RELKNLIER-CLLLGKP 387
           REL N  ER  L LG P
Sbjct: 362 RELANAAERHALGLGSP 378