Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  281 bits (720), Expect = 2e-80
 Identities = 171/462 (37%), Positives = 258/462 (55%), Gaps = 32/462 (6%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           +VL+V+D+  + L  ++AL+      +   S E+A    G+    +++ DI LPG  G+E
Sbjct: 7   TVLIVEDDPHVLLGCQQALALEDIACEGVGSAEQALERIGDDFAGIVVSDIRLPGIDGLE 66

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
                   D    V+ +TG  D++ A+ A++ GA DF+ KPF+ E+++  V+R + +R  
Sbjct: 67  LLNRLKARDRSLPVVLITGHGDIDMAVGAMRNGAYDFMEKPFSPERLVDVVRRALEQRGL 126

Query: 137 ERLQYALQRDFQRHCTTQ--IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
            R   AL+R      + +  IIG S   E L++ I   A + A+VLIEGE+GTGKELVAR
Sbjct: 127 SREVVALRRQLAEQSSLEGRIIGRSPAMEHLRELIANVADTSANVLIEGETGTGKELVAR 186

Query: 195 GIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            +H+ S RQ  PFV +NCG +   L ESE+FGH + AFTGA K R G    ANGGTLFLD
Sbjct: 187 CLHDFSRRQSHPFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHANGGTLFLD 246

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           E+  MP+ +Q  LLRVL++R +  +GS + + VD RV+AAT  +L    ++G+FR DLYY
Sbjct: 247 EVESMPINLQIKLLRVLQERTLERLGSNQSIPVDCRVIAATKADLDALGQSGQFRSDLYY 306

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLNV+ +E+ PLRER++D+ +L   F +          P    + +S +  +DWPGN+RE
Sbjct: 307 RLNVVTLELPPLRERREDILQLFEHFLQQSALRFDRETPTLDSQTLSRLMAHDWPGNVRE 366

Query: 374 LKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           L+N+ ER  L             GLP + +     S   N  +   + V           
Sbjct: 367 LRNVAERYAL-------------GLPAFKKGP---SGGANQGLLFAEAV----------- 399

Query: 434 PLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
              A E+  +   +    GN S A+++LG+A+ TL  K K++
Sbjct: 400 --EAFERNLLTDALQRTGGNLSQASQELGMAKTTLFDKVKKY 439