Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., DNA-binding response regulator from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  288 bits (738), Expect = 2e-82
 Identities = 184/473 (38%), Positives = 259/473 (54%), Gaps = 33/473 (6%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +LL+DD+    L+LK  L +    V+ A +  +   +     +DL++ D  LP + G+E 
Sbjct: 4   ILLIDDDPAFCLMLKGYLKRQQYEVETAYTANDGLRVLKASSFDLILTDFRLPDKDGLEL 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN- 136
                       VI MT +AD+ TA+ A+K+GA ++I KP N ++ L  ++  +N++   
Sbjct: 64  LSQIRVLTQEVPVILMTTYADIRTAVRAIKMGAFEYITKPINPDETLLVIKNALNRKAEA 123

Query: 137 --ERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
             E +  A    FQ      + G S Q E +++ I   AP+  SV+IEGESGTGKE VAR
Sbjct: 124 EQEAVSTASAGSFQF-----VRGQSPQAEQIEEFISLVAPTNLSVIIEGESGTGKEYVAR 178

Query: 195 GIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            IHE S R   PFV I+CGA++ EL  SELFG+  GAFTGA + + G F  A GGTLFLD
Sbjct: 179 MIHEQSKRHDRPFVAIDCGALSKELAGSELFGYVKGAFTGALQDKRGQFEAAEGGTLFLD 238

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           EIG +P  +Q  LLR L++R VR +GS  + NVDVRV+AATN +L Q V NG+FR DLY+
Sbjct: 239 EIGNLPYEVQVKLLRALQERKVRKLGSTTDQNVDVRVLAATNEDLVQAVANGQFREDLYH 298

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLN  KI + PLR+R  D+      F +    EL   +  +      +M  Y+WPGN+RE
Sbjct: 299 RLNEFKINLPPLRDRDGDVVLFANHFLQQANRELEKAVQGFDAATEDAMLRYNWPGNLRE 358

Query: 374 LKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           LKN+++R +LL K      +EL    ++  P                   Q S+ Y    
Sbjct: 359 LKNVVKRAVLLAKSEFVTLQELPAEIVHYTPA----------------PQQASVAYSPHD 402

Query: 434 PL-----SAVEKAHIQQIVALHEG---NKSAAARDLGVARKTLERKYKEWESE 478
           P+     S  E+   + I+A+ E    NKS AAR L + RKTL  K K +  E
Sbjct: 403 PMETDLKSINERTEREMILAMLERVKYNKSKAARLLNIDRKTLYNKLKLYNIE 455