Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  275 bits (704), Expect = 2e-78
 Identities = 171/439 (38%), Positives = 242/439 (55%), Gaps = 39/439 (8%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           SVL+VDDE  ++ + +  L +    V  A  + +A     +  +D+LI D+ LP   G++
Sbjct: 9   SVLVVDDEPDLRTLYELTLLREGHAVVAAPDLTQAREWLAQQRFDVLISDMRLPDGLGLD 68

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
                 D       I +T +   E A+ +LK GA D++ KP +L+Q+  AV   +  +  
Sbjct: 69  LLRELADAQRPEKCIVITAYGSAENAVESLKAGAFDYLTKPVDLKQLRSAVTAALQSQRG 128

Query: 137 ERLQYA-----------LQRDFQR---------HCTTQIIGSSVQTELLKQRIVQFAPSR 176
                A            Q D  R             +I+G+S     +K RI + A S 
Sbjct: 129 SPAAAANGAIVATANGNAQGDATRKPPAASSGVQALRRIVGNSPSIGQIKSRIEKVASSM 188

Query: 177 ASVLIEGESGTGKELVARGIHEASGRQ-GPFVPINCGAIAPELLESELFGHTSGAFTGAK 235
           A VLI GESGTGKELVAR +H+ S R  GPFV +NCGAI   L+E+E FG   GA+TGA 
Sbjct: 189 APVLILGESGTGKELVARAVHDCSHRSVGPFVAVNCGAIPENLIEAEFFGARKGAYTGAT 248

Query: 236 KSREGLFRVANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATN 295
             REG F+ A GGTLFLDEIG++PL MQA LLRV+++R VR +G  +E  VDVR+V+AT+
Sbjct: 249 TDREGYFQAARGGTLFLDEIGDLPLAMQAKLLRVIQERRVRALGGVQEEAVDVRLVSATH 308

Query: 296 RNLQQEVENGRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWA 355
           R+L   V++G+FR DL+YRLNV+ +    LRER++DL  L+      LCAE G  +P+ +
Sbjct: 309 RDLNALVQSGQFRQDLFYRLNVIGLRSPALRERREDLPLLVEALLARLCAESGQDVPRVS 368

Query: 356 YEDISSMQDYDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSE 415
              ++ +Q  + PGN+REL+NL++R L L    A             EPE    +S++ E
Sbjct: 369 ERALAWLQARELPGNVRELENLLQRALALSSGEA------------LEPE-DFGESDDEE 415

Query: 416 ISLGDNVTQPSLGYPNDWP 434
           I      TQP    P D P
Sbjct: 416 IP-----TQPDALSPADGP 429