Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., Nitrogen regulation protein NR(I) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  261 bits (667), Expect = 4e-74
 Identities = 172/469 (36%), Positives = 255/469 (54%), Gaps = 12/469 (2%)

Query: 19  LLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEWE 78
           L+VDD+V    +L + ++     V  A+++ +A         DL++LD+ LP  SG++  
Sbjct: 5   LIVDDDVDASAMLGELIAMQGLTVATANTLRDARKQLALQPPDLVLLDLRLPDGSGMD-- 62

Query: 79  EAFTDPDHRA--DVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
             F DP+  A  +V+ +TG A LET+I AL+LGA D+I+KP   +Q+   + R     + 
Sbjct: 63  -LFADPELLANSEVVLLTGHASLETSILALRLGAVDYIVKPITPKQLQGVLSRVSKPSVF 121

Query: 137 ERLQYALQRDF-QRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARG 195
           +     L           Q+ G S     + ++I + A +  SV I GESGTGKE+VA+ 
Sbjct: 122 KAEVAGLTASVASTGHFGQLWGRSPSMLQVYEQITRVAGTGVSVFITGESGTGKEVVAQT 181

Query: 196 IHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDE 254
           IHE S R+  PF+ +NCGAI+P L+ESELFGH  G+FTGA +  +G F  A GGTLFLDE
Sbjct: 182 IHELSRRRKMPFIGVNCGAISPNLIESELFGHEKGSFTGADRQHQGFFERAAGGTLFLDE 241

Query: 255 IGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYR 314
           I EMPL +Q  LLRVLE      VG+ +    DVR++AATNR   Q V +GR R DL YR
Sbjct: 242 ITEMPLDLQVKLLRVLETGRFLRVGATQSQETDVRIIAATNRQPMQAVADGRLRTDLMYR 301

Query: 315 LNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIREL 374
           LNV  I++ PLRER  D+  L   F +++  + G    +++ E +  +  Y WPGN+REL
Sbjct: 302 LNVFPIDLPPLRERLDDVPLLANRFLRLIGEQEGKE-KRFSPEALERLAAYAWPGNVREL 360

Query: 375 KNLIERCLLL--GKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQP--SLGYP 430
           +N ++R  ++  G+  A  W      P  A   V    +         +   P  S+  P
Sbjct: 361 RNAVQRAYVMTAGQTIAAQWLPGAADPPGAPATVAAPVAPVETALAAPDARHPEGSVVLP 420

Query: 431 NDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWESED 479
               L+  E+  I   +  +   K   A  LG++ KTL  + K++ ++D
Sbjct: 421 LGISLAQAEQTLILATLQHYGRQKERTAAALGISLKTLYNRLKQYAADD 469