Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Sigma-54 dependent response regulator from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  382 bits (980), Expect = e-110
 Identities = 215/464 (46%), Positives = 299/464 (64%), Gaps = 30/464 (6%)

Query: 16  FSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEE-AEVLRGEHHYDLLILDINLPGRSG 74
           +S+L+VDDE GM   L K L+     V  ASS E+ A+ LRG HH DL+ILDI+LPG+SG
Sbjct: 20  WSILIVDDEQGMLNFLVKTLAPRCHFVMSASSAEDGAQWLRG-HHVDLVILDISLPGKSG 78

Query: 75  IEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR 134
           + W +   +     +VI +T FADL+TAI AL+ GASDFILKPF + Q+L AV+ C  + 
Sbjct: 79  VVWLKELREQGFTGEVILITAFADLDTAIEALRAGASDFILKPFRVPQILNAVKHCYERS 138

Query: 135 LNERLQYALQRDFQRHCTTQ--IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
              R  + L+R        +  ++G S   + L++ I + AP  ++VL++GESGTGKELV
Sbjct: 139 RLRRENFVLRRAVVTSAPGRAALVGGSSAMQQLRESIARVAPVNSTVLLQGESGTGKELV 198

Query: 193 ARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           AR +H  S R G PFVP+NC A++PEL+ESELFGH  GAF+GA ++R+GLF  A GGTLF
Sbjct: 199 ARELHALSSRAGGPFVPVNCAAVSPELIESELFGHAKGAFSGATRARDGLFHYAQGGTLF 258

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
           LDEI E+PL++QA+LLR +E   +RPVGSE+ V +++R+VAATNR L +EV  GRFR DL
Sbjct: 259 LDEIAELPLSIQATLLRAIEDLNIRPVGSEQLVPLNLRIVAATNRQLSEEVAAGRFRKDL 318

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
           Y+RL V+ + + PLRE K+D+ EL+  F   L   LG+     +  ++  ++ YDWPGN+
Sbjct: 319 YFRLQVVDLALPPLREHKEDIAELVAHFIAQLAPSLGVEPLAISEHEMDFLRQYDWPGNV 378

Query: 372 RELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPN 431
           REL+NL+ER L+LG         LN   +Y  P V      +S +             P 
Sbjct: 379 RELRNLLERSLILG--------NLNVSALY--PGVARRPETSSAL-------------PT 415

Query: 432 DWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
           D  L  +EK HI  ++   +G+K+ AA+ LGV+R+TLER+  EW
Sbjct: 416 D--LHTLEKMHILSVLDSVQGDKTRAAQLLGVSRRTLERRVAEW 457