Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., sigma-54-dependent response regulator transcription factor ZraR from Escherichia coli ECRC62

 Score =  288 bits (737), Expect = 3e-82
 Identities = 183/460 (39%), Positives = 256/460 (55%), Gaps = 35/460 (7%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDD++    +L+  L  W   V LA+S  +A     E  +DL++ D+ +    GI  
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            +     +    V+ MT ++ +ETA+ ALK GA D+++KP + +  LQA        L +
Sbjct: 68  LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDN-LQAT-------LEK 119

Query: 138 RLQYALQRDFQRHCTTQ----IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
            L +    D +    T     ++G S   + L   I   APS A+VLI G+SGTGKELVA
Sbjct: 120 ALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179

Query: 194 RGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
           R IH +S R + P V +NC A+   LLESELFGH  GAFTGA K REG F  A+GGTLFL
Sbjct: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DEIG++   MQ  LLR +++R V+ VGS + ++VDVR++AAT+R+L  EV  GRFR DLY
Sbjct: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIR 372
           YRLNV+ IEV  LR+R++D+  L+  F +         +  +  + +  +  YDWPGNIR
Sbjct: 300 YRLNVVAIEVPSLRQRREDIPLLVGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359

Query: 373 ELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPND 432
           EL+N +ER ++L                     +T    +  E+ L    T   LG   D
Sbjct: 360 ELENAVERAVVL---------------------LTGEYISERELPLAIASTPIPLGQSQD 398

Query: 433 -WPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERK 471
             PL  VEK  I   +    GNK+ AAR LG+ RKTL  K
Sbjct: 399 IQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAK 438