Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., sigma-54 dependent transcriptional regulator from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  284 bits (727), Expect = 4e-81
 Identities = 178/474 (37%), Positives = 268/474 (56%), Gaps = 17/474 (3%)

Query: 15  AFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEA--EVLRGEHHYDLLILDINLPGR 72
           A ++L+VDD+   + +++  L +  + V  A+S  EA   + RG    DL++LD+ +P  
Sbjct: 2   AKTILVVDDDPTQRRLIQAVLERDGNAVVHAASGGEAIDRMTRGGGA-DLILLDMVMPEM 60

Query: 73  SGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN 132
           SG+E             VI +T    ++  + A++ GA DF +KP   E++L  V+  M 
Sbjct: 61  SGLECLAELRSAGINEPVIVLTANGGIDMVVKAMQAGAQDFFVKPVGPERLLVGVRNAMQ 120

Query: 133 -KRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKEL 191
            KRL   +    +R   R     I+G S    ++K    + A S   VLI GESG GKE+
Sbjct: 121 MKRLTAEVGRLTKRVQGRTSFDDIVGDSPPMRMVKALGARAAKSSIPVLITGESGVGKEV 180

Query: 192 VARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTL 250
           +AR +H AS R G PFV +NCGA+   L+ES LFGH  GAFTGA     G FR A+GGTL
Sbjct: 181 IARALHGASDRAGKPFVAVNCGALPANLIESILFGHEKGAFTGAVDKTLGKFREADGGTL 240

Query: 251 FLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGD 310
           FLDEIGE+PL MQ  LLR L++  + PVG ++ V +DVR+V+ATNR+  Q+V++G FR D
Sbjct: 241 FLDEIGELPLDMQVKLLRALQEGEIDPVGGKRPVKIDVRIVSATNRDPAQQVKDGAFRED 300

Query: 311 LYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGN 370
           L+YRLNV  IE   LR+R++D+  L+  F     AE G  +   A E ++ +Q +DWPGN
Sbjct: 301 LFYRLNVFPIEAPSLRDRREDIAPLVDHFIARFNAEEGKRIAGCAPETLALLQGFDWPGN 360

Query: 371 IRELKNLIERCLLLGKPP---AHYWRELNGL--PIYAEPEVTMSQSNNSEISLGDNVTQP 425
           +R+L+N + R ++L   P    H +  ++G+  P+     + ++ +  ++      V QP
Sbjct: 361 VRQLENAVFRAIVLADAPFLQPHDFPAISGVAAPMPDAQPLQVATAAGAQTDAAAQVDQP 420

Query: 426 -----SLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
                  G+     L  +E+  IQ  + ++ G+ S  AR LG+ R TL RK +E
Sbjct: 421 IRILDERGHLR--TLEDIERDLIQHAIEVYAGHMSEIARRLGIGRSTLYRKVRE 472