Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  298 bits (763), Expect = 3e-85
 Identities = 179/464 (38%), Positives = 268/464 (57%), Gaps = 22/464 (4%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDDE  ++ +L  A +        A++   A  L  + H D++++DI +P   GI+ 
Sbjct: 7   ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKA 66

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN----K 133
            +     + R  VI MT +A++ETA+ AL+ GA D+++KPF+L+++   VQR +     K
Sbjct: 67  LKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMK 126

Query: 134 RLNERLQYALQRDFQ-RHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
           +    L  AL   +Q  H  T    S    ++ K    + A S+ASVLI GESGTGKEL+
Sbjct: 127 KEIRHLHQALSTSWQWGHILTN---SPAMMDICKDT-AKIALSQASVLISGESGTGKELI 182

Query: 193 ARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           AR IH  S R +GPF+ +NC A+   LLESELFGH  GAFTGA+  R+GLF  AN GTL 
Sbjct: 183 ARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
           LDEIGEMPL +QA LLR+L++R    +G  + + VD+R++AATNR+LQ  V+ G FR DL
Sbjct: 243 LDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
           +YRLNV+ + + PLR+R++D+  L   F +   +E    +       +S +  + WPGNI
Sbjct: 303 FYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI 362

Query: 372 RELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPN 431
           REL N+IER +++   P  +  +L        P++     N  E+      T P      
Sbjct: 363 RELSNVIERAVVMNSGPIIFSEDL-------PPQIRQPVCNAGEVK-----TAPVGERNL 410

Query: 432 DWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
              +  VEK  I +++   EGN++  A  LG++R+ L  K +E+
Sbjct: 411 KEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEY 454