Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., Regulatory protein AtoC from Azospirillum sp. SherDot2

 Score =  381 bits (979), Expect = e-110
 Identities = 217/462 (46%), Positives = 297/462 (64%), Gaps = 25/462 (5%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           SVL+VDDE G++  L ++L +   RV    S E+A +    H  DL+ILDI LPG+SG++
Sbjct: 27  SVLIVDDEEGIRNFLSRSLERRGWRVTTTGSAEDAALHLERHCVDLIILDIALPGQSGLD 86

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
           W +         DVI +T FAD++TAI AL+ GA+D ILKPF +EQ++ A+ RCM +   
Sbjct: 87  WLKELQAAGFGGDVILITAFADIDTAIEALRAGAADLILKPFRVEQIVSAIARCMERTRL 146

Query: 137 ERLQYALQRDF--QRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
           +R  + L+R    +R  T +I+G S     L+  I + APS ++VLIEGESG GKELVAR
Sbjct: 147 QRENFVLRRQLAKRRGTTDEIVGRSAAILRLRALIERVAPSPSTVLIEGESGVGKELVAR 206

Query: 195 GIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            +H  S R + PFV +NC A++ +L+E+ELFGH  GAFTGAK++R+GLF  A+GGTLFLD
Sbjct: 207 ALHTRSHRAERPFVALNCAAVSADLVEAELFGHLRGAFTGAKEARKGLFYYAHGGTLFLD 266

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           EIGE+PL +Q+ LLRVLE+R +RPVG E+E+ VDVRVVAATNR+L+ EV  GRFR DL+Y
Sbjct: 267 EIGELPLALQSKLLRVLEERRIRPVGGEQELPVDVRVVAATNRDLKAEVAAGRFRADLFY 326

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RL V+ + V PLRER  D+ EL   F  +L   LG+P         +++  + WPGN+RE
Sbjct: 327 RLAVMTLRVPPLRERGDDVVELARRFMGVLSLRLGVPPLDIDPPLEAALIAHGWPGNVRE 386

Query: 374 LKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           L+NL+ER LL G+ P     E  GL +   PE   + +   +                  
Sbjct: 387 LRNLVERALLFGEFPL----EDLGLSVCVAPEGAGADAAGGQ------------------ 424

Query: 434 PLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
            L+ VEK HI  ++A   GN++ AA  LGV+RKTL+RK+ EW
Sbjct: 425 TLAEVEKRHILAVLADCGGNRARAAALLGVSRKTLDRKWAEW 466